Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g33 ATGGGTGAAGCAGAGACCTTCGCTTTCCAGGCTGAGATCAACCAGCTTCTCAGTCTCATCATAAATACCTTTTACAGCAACAAGGAGATTTTTCTTCGCGAACTCATCAGCAATGCCTCTGATGCATTAGATAAGATCCGATTCGAGAGCCTGACAGACAAGAGCAAGCTTGATGCTCAGCCAGAGCTTTTTATTAGGCTTGTTCCTGACAAGGTCAATAAGACCCTTTCAATCATTGATAGTGGCGTCGGCATGACCAAAGCAGATTTGGTGAACAACTTGGGAACTATTGCACGATCCGGAACAAAAGAATTCATGGAGGCATTGCAGGCTGGGGCTGATGTGAGCATGATTGGGCAATTTGGTGTTGGGTTTTACTCGGCCTACCTAGTTGCCGAGAAGGTTATTGTGACAACCAAGCATAATGATGATGAACAGTACATTTGGGAGTCTCAAGCTGGTGGATCCTTCACAATCACCAGGGATGTTAATGGAGAACAACTGGGTAGAGGAACTAAGATCACACTCTTCCTCAAGGAAGACCAGATGGAATACTTGGAGGAGAGGAGGTTGAAGGACCTGGTGAAGAAGCACTCTGAGTTCATTAGCTACCCAATCTACCTCTGGACTGAGAAGACCACTGAAAAAGAGGTCAGTGATGATGAAGATGAGGAACCCAAGAAGGAAGAGGAGGGTGATGTTGAGGAAGTGGACGAGGAGAAGGAAACCAACCTAACCAATGATTGGGAAGAGCATCTTGCTGTAAAGCACTTCTCCGTTGAAGGGCAACTAGAATTCAAGGCTATTCTTTTTGTTCCAAAGAGGGCTCCTTTTGATCTTTTCGACACCAGGAAGAAGATGAACAACATCAAGCTATATGTTAGGAGGGTGTTTATTATGGATAACTATCCTCAAGGTGATCAGAAAGAATCTTGTGAAGAAGTGTATCGAGATGTTCAATGA 963 44.55 MGEAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSKLDAQPELFIRLVPDKVNKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTITRDVNGEQLGRGTKITLFLKEDQMEYLEERRLKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEDEEPKKEEEGDVEEVDEEKETNLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNYPQGDQKESCEEVYRDVQ* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 412567 416019 + Vvi2g33 Vvi2g33 782732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g33 320 Gene3D - 212 308 - -
Vvi2g33 320 PRINTS 90kDa heat shock protein signature 5 25 IPR020575 -
Vvi2g33 320 PRINTS 90kDa heat shock protein signature 26 48 IPR020575 -
Vvi2g33 320 PRINTS 90kDa heat shock protein signature 75 92 IPR020575 -
Vvi2g33 320 PRINTS 90kDa heat shock protein signature 93 110 IPR020575 -
Vvi2g33 320 PRINTS 90kDa heat shock protein signature 118 140 IPR020575 -
Vvi2g33 320 PRINTS 90kDa heat shock protein signature 170 187 IPR020575 -
Vvi2g33 320 PRINTS 90kDa heat shock protein signature 188 206 IPR020575 -
Vvi2g33 320 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 243 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi2g33 320 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 244 303 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi2g33 320 ProSitePatterns Heat shock hsp90 proteins family signature. 25 34 IPR019805 GO:0005524|GO:0006457|GO:0051082
Vvi2g33 320 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5 213 IPR036890 -
Vvi2g33 320 Pfam Hsp90 protein 244 303 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi2g33 320 Pfam Hsp90 protein 184 242 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi2g33 320 SUPERFAMILY Ribosomal protein S5 domain 2-like 243 303 IPR020568 -
Vvi2g33 320 PANTHER HEAT SHOCK PROTEIN 90-1 244 303 - -
Vvi2g33 320 PANTHER HEAT SHOCK PROTEIN 90-1 1 243 - -
Vvi2g33 320 SMART HKATPase_4 27 182 IPR003594 -
Vvi2g33 320 CDD HATPase_Hsp90-like 14 202 - -
Vvi2g33 320 Gene3D - 1 211 IPR036890 -
Vvi2g33 320 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 181 IPR003594 -
Vvi2g33 320 MobiDBLite consensus disorder prediction 215 241 - -
Vvi2g33 320 MobiDBLite consensus disorder prediction 217 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g33 K04079 HSP90A, htpG; molecular chaperone HtpG - vvi:100265661 514.227
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g33 Vvi16g762 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g33 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000587 3 3 3 2 4 2 5 5 4 3 3 3 4 4 3 4 3 7 3 3 3 4 5 0 4 3 1 4 4 3 102