Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g331 ATGGCAAGCCAATCCAGTCCGCAATCAGTCCACAGCTTCACCGTTAAGGATGCTAGGGGAAATGATGTTGATCTTAGCATCTACAAGGGAAAAGCCCTCTTGATTGTCAATGTTGCATCACAATGTGGCTTGACCAATTCAAACTACACAGAGCTGCATCAGTTGTATGAGAAATACAAAGATCAAGGTTTGGAGATTTTGGCATTCCCATGCAATCAGTTTGGAGCACAGGAACCTGGGAGTAATGAAGAGATAGAAAAGTTTGTTTGCACTCGCTTTAAGGCTGAGTATCCCATCTTTGATAAGATTGATGTGAATGGCGATAGTGCTGCTCCACTGTACAAGTTTCTGAAGTCAAGCAAAGGTGGACTCTTTGGTGACAACATCAAATGGAATTTCTCCAAGTTCCTGGTGGACAAAGATGGCAAAGTTGTTGACCGCTATGCACCCACAACTTCTCCCCTTAGCATCGAGAAGGACATAAAGAAACTGCTCGGAATCTCATAA 507 43.39 MASQSSPQSVHSFTVKDARGNDVDLSIYKGKALLIVNVASQCGLTNSNYTELHQLYEKYKDQGLEILAFPCNQFGAQEPGSNEEIEKFVCTRFKAEYPIFDKIDVNGDSAAPLYKFLKSSKGGLFGDNIKWNFSKFLVDKDGKVVDRYAPTTSPLSIEKDIKKLLGIS* 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3140923 3144145 - Vvi2g331 Vvi2g331 783030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g331 168 PIRSF Glutathion_perox 1 167 IPR000889 GO:0004602|GO:0006979
Vvi2g331 168 Pfam Glutathione peroxidase 10 118 IPR000889 GO:0004602|GO:0006979
Vvi2g331 168 ProSiteProfiles Glutathione peroxidase profile. 1 168 IPR000889 GO:0004602|GO:0006979
Vvi2g331 168 PANTHER GLUTATHIONE PEROXIDASE 1 168 - -
Vvi2g331 168 PANTHER GLUTATHIONE PEROXIDASE 1 168 IPR000889 GO:0004602|GO:0006979
Vvi2g331 168 CDD GSH_Peroxidase 9 161 IPR000889 GO:0004602|GO:0006979
Vvi2g331 168 SUPERFAMILY Thioredoxin-like 8 165 IPR036249 -
Vvi2g331 168 ProSitePatterns Glutathione peroxidases signature 2. 67 74 IPR029760 -
Vvi2g331 168 ProSitePatterns Glutathione peroxidases active site. 30 45 IPR029759 -
Vvi2g331 168 PRINTS Glutathione peroxidase family signature 28 45 IPR000889 GO:0004602|GO:0006979
Vvi2g331 168 PRINTS Glutathione peroxidase family signature 64 80 IPR000889 GO:0004602|GO:0006979
Vvi2g331 168 PRINTS Glutathione peroxidase family signature 129 138 IPR000889 GO:0004602|GO:0006979
Vvi2g331 168 Gene3D Glutaredoxin 1 166 - -
Vvi2g331 168 ProSiteProfiles Thioredoxin domain profile. 4 166 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g331 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - vvi:100259774 341.273
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g331 . . . . . . . . . . Cma02g01461 Cma15g01220 Car02g01226 Car15g01101 . . . . . . . . . . . . . . . . . Cone8ag0312 . Cone6ag0772 Cone9ag0778 . Csa05g00290 Chy09g01216 . . . . Bda09g00043 . . . Bma12g00376 . Cmo02g01496 Cmo15g01286 . . . . . . Bhi12g00244 . . . . . . Cla01g00272 Cam01g0281 Cec01g0273 Cco01g0288 Clacu01g0280 Cmu01g0268 Cre09g2241 Lsi09g00268 . . Cme09g01753
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198