Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g332 ATGAACAACCTTAAGCTGGGGGTAGATGTGGTTAGTGCACACAATCTTATGCCTAAAGATGGGCAAGGGTCATCTAGTGCCTTTGTAGAGCTCTACTTTGATGGTCAGAAGTTCCGAACCACTATCAAAGAAAAGGATCTCAACCCTGTTTGGAATGAAAGCTTCTATTTCAACATCTCCGATCCTTCCAACCTCCATTACCTCACTCTTGATACTGCAAGCACTTATGATCTTGTTGAACAAATGCAGTTCCTCTTTGTAAGGGTTGTTAAGGCTCGGGAGCTTCCTGCTATGGATGTTACTGGGAGTCTTGATCCATATGTTGAGGTGAAAATTGGAAACTATAAAGGAGTTACAAAGCACATGGAGAAGAAGCAAAATCCAGAGTGGAATGTAGTGTTTGCCTTTTCGAGGGATCGGATGCAAGCTTCTGTACTAGAAGTAGTGGTTAAGGACAAGGATCTGGTAAAAGATGACTTTGTAGGCAGGGCAAGGTTTGACCTCAATGAGGTTCCTATGCGGGTTCCGCCTGATAGCCCACTGGCTCCAGAATGGTACCGGCTAGAGGACAAGAAGGGGGAGAAGATCAAGGGTGAGCTGATGCTTGCAGCACAAGATTTGGTCCCAACAGAGAAGAATCGTTTCCCAGATGTGTATGTCAAGGTACATATAGGAAACCAGGTCATGAAGACAAAGACAGTTCAGGCTCGGTCACTGACCACACTCTGGAATGAGGATCTTTTATTCGTTGCTGCCGAACCCTTTGAAGATCATCTGATACTTTCAGTCGAGGATCGTGTGGGTCCTGGAAAAGACGAGATCCTGGGAAGGGTCATCATACCATTGAGCACAGTAGATAGGCATGGGAAGGGCACATCAGATACCTACTGTGTGGCCAAGTATGTGGCAGCAAGGTTAGGTCGAGCAGAGCCCCCACTCCGGAAGGAGGTGGTGGAATACATGTCGGATGTGGATTCACACCTTTGGAGCATGCGGCGGAGCAAGGCAAATTTCTTCCGGCTAATGTCAATTTTCTCGGGATTATTTGCAGTAGGGAAATGGTTTGGTGATATCTGCATGTACCCTCCACATATGAACACAAGGATCTCACAAGCTGATGCAGTGCACCCTGATGAACTTGATGAGGAGTTCGACACATTTCCAACAAGCCGGAGCCCAGAGCTGGTCATAGCAGCCTTGGCAGGATTCTACATGATGAGACATCCCAGATTTCGCTACAGGTTGCCATCAGCACCAATCAACTTCTTCCGTCGCCTGCCCGCCAGGACTGATAGTATGTTATGGAACCACCCCCGAGTAGAAAACCAGGAGCAAAACTTAGAAGAAACAATTTTGTCACCAGAAATGGCCATTTCTGTGTCCAAGAAGAGATCTAGACTACCCAAAAAGGCAGAAGCAGAAGAACTTGGTTCCTTCATTTCAGTTCTATCCAAACTTCTATGTAGAATCCCTGCGGTGCTTCTCGTTTTAGTCCTTCTCTTCCTATGGTCTTCTTCCACCACCATTATCTCCGGGAACATTGTCCACGTGTGCGTGTCTTCCCGGAGGCTTAACAACCTCTACTGCCTCTCTGCTGGAACCCAACCTAATTTTGAAATCCCAGTTTCGATCGTCCACAATACTTCTAGTAGTACTAGTACTACTCCAGAGATGGTGGATGTTTTTGTTGAAAACCCGGTTCCAATTGCAGATAACAGCACTGGAAATGAAAGAGATGAGGTTGAGAATGCTGTTAAGATAGTTGAAGAGCAGCTTCGGGCACATCGATCCTGGACGGCAAATGGGAATACTGGTGACTGCAATGGGAGGGGGGTGTTTGTGTATGATCTGCCACCAAAGTTCAATAAAGAGTTGGTGGATCACTGTTATGATATGATTCCATGGATGGACTTCTGTAAATATTTGAGCAACGAGGCGTTGGGAGAGCCGATACTGAAGCTTGGAAAGGGATGGCACCAGACTCATCAGTATTCTCTGGAACCAATATTTCATTCCAGGGTTTTGAAGCATCCTTGTAGGGTTTACAATCAGAATGAAGCAAAGCTCTTCTATGTCCCATTCTATGGTGGACTAGACATCCTGCGATGGCACTTCAAGAATGTTTCCAGTGATGTCAAGGACACCTTGGGGTTAGAACTCATACAGTGGCTTGAGTCTCAGCAGCCATGGATTCGAAATTCAGGTAAGGACCATGTGTTTGTTTTAGGCAAAATCTCTTGGGATTTCAGGAGGAATAACAAAATTTCATGGGGGACTAGATTTCTAGAGCTTGATCAAATGCAGAACCCAATAAAGCTCTTGATAGAGAGACAACCATGGCATATGAACGACATTGGCATCCCACATCCTACTCACTTCCACCCCCATTCAGACGACGATATCATCACATGGCAGCTCAAAATCATGCGGTCCAAGCGCAAAAACCTAGTGAGTTTTGCAGGCGCTGCAAGGCCAGGTGCACCAGAAAACATAAGGTCGATACTGATCAAACAGTGCACTTCATCAGATACCGGAAAATGCCAGTTTCTGAACTGCGATTCAGGTGATTGTCGTCAGCCTGAATCTATCATTGAGCTGTTCATGGAGTCGGAATTCTGCTTACAGCCTCCTGGAGACAGCCCCACAAGAAAATCAGTATTTGACTCTCTGGTATCAGGCTGCATCCCAGTTCTGTTCGATTCATTCACAGCATACTACCAGTATCCATGGCATTTACCAGAGGATCATACCAGGTATTCAGTGTTCATAGACCAAGAAGATGTGAGATCAATGAAGATGAATGTGGTGGAGAGGCTGATGAAGGTTTCAGTGAGGGAAAGAGAGGACATGAGGAGATACATTGTGTATGAACTGTTGCCTGGATTGGTGTATGGAGATTCAAGTTCTGAGTTTGACAAGTTCCAGGATGCATTTTCCATCAGCATGAACAACCTTCTCGAAAGGATCAGCAGATTGGATTCAACTTCTGTAAATTAA 2997 45.65 MNNLKLGVDVVSAHNLMPKDGQGSSSAFVELYFDGQKFRTTIKEKDLNPVWNESFYFNISDPSNLHYLTLDTASTYDLVEQMQFLFVRVVKARELPAMDVTGSLDPYVEVKIGNYKGVTKHMEKKQNPEWNVVFAFSRDRMQASVLEVVVKDKDLVKDDFVGRARFDLNEVPMRVPPDSPLAPEWYRLEDKKGEKIKGELMLAAQDLVPTEKNRFPDVYVKVHIGNQVMKTKTVQARSLTTLWNEDLLFVAAEPFEDHLILSVEDRVGPGKDEILGRVIIPLSTVDRHGKGTSDTYCVAKYVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMSIFSGLFAVGKWFGDICMYPPHMNTRISQADAVHPDELDEEFDTFPTSRSPELVIAALAGFYMMRHPRFRYRLPSAPINFFRRLPARTDSMLWNHPRVENQEQNLEETILSPEMAISVSKKRSRLPKKAEAEELGSFISVLSKLLCRIPAVLLVLVLLFLWSSSTTIISGNIVHVCVSSRRLNNLYCLSAGTQPNFEIPVSIVHNTSSSTSTTPEMVDVFVENPVPIADNSTGNERDEVENAVKIVEEQLRAHRSWTANGNTGDCNGRGVFVYDLPPKFNKELVDHCYDMIPWMDFCKYLSNEALGEPILKLGKGWHQTHQYSLEPIFHSRVLKHPCRVYNQNEAKLFYVPFYGGLDILRWHFKNVSSDVKDTLGLELIQWLESQQPWIRNSGKDHVFVLGKISWDFRRNNKISWGTRFLELDQMQNPIKLLIERQPWHMNDIGIPHPTHFHPHSDDDIITWQLKIMRSKRKNLVSFAGAARPGAPENIRSILIKQCTSSDTGKCQFLNCDSGDCRQPESIIELFMESEFCLQPPGDSPTRKSVFDSLVSGCIPVLFDSFTAYYQYPWHLPEDHTRYSVFIDQEDVRSMKMNVVERLMKVSVREREDMRRYIVYELLPGLVYGDSSSEFDKFQDAFSISMNNLLERISRLDSTSVN* 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3144643 3153646 - Vvi2g332 Vvi2g332 783031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g332 998 SMART C2_3c 5 82 IPR000008 -
Vvi2g332 998 SMART C2_3c 196 294 IPR000008 -
Vvi2g332 998 SMART C2_3c 84 180 IPR000008 -
Vvi2g332 998 Gene3D C2 domain 2 71 IPR035892 -
Vvi2g332 998 Pfam Plant phosphoribosyltransferase C-terminal 396 434 IPR013583 -
Vvi2g332 998 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 466 992 IPR004263 GO:0006486|GO:0016757
Vvi2g332 998 PANTHER XYLOGLUCAN-SPECIFIC GALACTURONOSYLTRANSFERASE 1-LIKE 466 992 - -
Vvi2g332 998 Gene3D C2 domain 72 201 IPR035892 -
Vvi2g332 998 Gene3D C2 domain 202 300 IPR035892 -
Vvi2g332 998 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 202 293 IPR035892 -
Vvi2g332 998 Pfam C2 domain 5 63 IPR000008 -
Vvi2g332 998 Pfam C2 domain 85 179 IPR000008 -
Vvi2g332 998 Pfam C2 domain 202 290 IPR000008 -
Vvi2g332 998 Pfam Exostosin family 607 932 IPR040911 -
Vvi2g332 998 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 80 203 IPR035892 -
Vvi2g332 998 CDD C2B_MCTP_PRT_plant 84 203 - -
Vvi2g332 998 ProSiteProfiles C2 domain profile. 66 186 IPR000008 -
Vvi2g332 998 ProSiteProfiles C2 domain profile. 187 296 IPR000008 -
Vvi2g332 998 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 66 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g332 - - - vvi:104881945 1110.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g332 Vvi15g903 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g332 . . . Bda08g00363 . . . . . . Cma02g01017 Cma15g01389 Car02g00762 Car15g01252 . . Cpe05g00704 . . . . . . . . . . . . . . . . Cone6ag0771 . . . . . . . . . . . Bma05g00816 Bma12g00167 . . Cmo15g01454 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012599 0 1 0 0 0 0 1 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 27