Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g335 ATGGCGCCCAAGTTTCTGTCCTCTACTCGAAATGAGAGGTCCGGAAAGGGCGTGCCGGAGAAGGAGGAGAATGCGGAAGGATCGCAGGCCAAGGCGATGTATTCGGTGACCGGAATGACGTGCTCCGCCTGCTCCGGACAGGTGGAGAGGGCCCTCAGGCAGCTGCCGGGGATCCAAGACGCGGTCGTTGATGCTCTCAGTAATAGGGCTCAGGTCACGTTTTATCCGGCTTTGATTAACGAGGAGACAATCCGTGAGACCATTGAAGATGTGGGTTATCAGGCCACATTGATTCAAGATCATCAGACAAATGCCAAATCCACTCAAATGTATGAGGAAGCACAAGTGCATTATGATCCCAAGATGGTAAGCTACAAAGAGCTTTTGGAAGCCATAGAAGATACTGGGTCTGTAGCTATACTTATTACTACTGGCTACATGAGCAAGCTTCAGCTTAAAGTTGATGGAGCAATGATATTCCCTGAAGGAGGAAGAGAAGTTCATGAAAAGGAGATTGAGCGAAATTATAGATCATTTCTATGGAGTTTGGTCTTTGCAATTCCAGTATTCTTAACCTCCATGGTCTTTATATTTTGA 597 47.07 MAPKFLSSTRNERSGKGVPEKEENAEGSQAKAMYSVTGMTCSACSGQVERALRQLPGIQDAVVDALSNRAQVTFYPALINEETIRETIEDVGYQATLIQDHQTNAKSTQMYEEAQVHYDPKMVSYKELLEAIEDTGSVAILITTGYMSKLQLKVDGAMIFPEGGREVHEKEIERNYRSFLWSLVFAIPVFLTSMVFIF* 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3184221 3186776 - Vvi2g335 Vvi2g335 783034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g335 198 PANTHER ATP7, ISOFORM B 157 197 - -
Vvi2g335 198 PANTHER ATP7, ISOFORM B 12 109 - -
Vvi2g335 198 PANTHER ATP7, ISOFORM B 107 157 - -
Vvi2g335 198 PRINTS Copper-transporting ATPase 1 signature 31 56 - -
Vvi2g335 198 PRINTS Copper-transporting ATPase 1 signature 57 80 - -
Vvi2g335 198 PRINTS Copper-transporting ATPase 1 signature 86 106 - -
Vvi2g335 198 PRINTS Copper-transporting ATPase 1 signature 190 198 - -
Vvi2g335 198 MobiDBLite consensus disorder prediction 1 30 - -
Vvi2g335 198 SUPERFAMILY HMA, heavy metal-associated domain 28 101 IPR036163 GO:0046872
Vvi2g335 198 Gene3D - 29 104 - -
Vvi2g335 198 ProSiteProfiles Heavy-metal-associated domain profile. 31 97 IPR006121 GO:0046872
Vvi2g335 198 CDD HMA 33 96 IPR006121 GO:0046872
Vvi2g335 198 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 12 109 - -
Vvi2g335 198 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 107 157 - -
Vvi2g335 198 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 157 197 - -
Vvi2g335 198 Pfam Heavy-metal-associated domain 35 94 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g335 K17686 copA, ctpA, ATP7; P-type Cu+ transporter [EC:7.2.2.8] - vvi:100242756 286.189
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g335 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g00240 . . . . . Lcy12g1661 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0070010 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1