Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g337 ATGGAAGCAGAGAATGAAATAAGGAGTAAGAGGTATGCTGCTGACATTTCCTCCATACGAGAAGCACAAGTGCGGATCAACTCATTCATACACAAAACTCCAGTTTTGACTTCAGAAACCCTCAATTCTCTTGCTGGGAGGGGGCTATTTTTTAAATGTGAATGTTTTCAGAAGGGTGGAGCCTTCAAATTTAGAGGTGCCTGCAATGCTATTTTTTCACTCGATGATGAGCAGGCAGCCAAAGGGGTTGTAACTCACAGCAGTGGGAATCATGCTGCAGCATTGTCTCTGGCTGCAAAACTTCGGGGGATTCCGGCATATATAGTTATACCAGAAAATGCTCCAAGATGCAAAGTTGAGAATGTCATACGTTACGGTGGCCAGGTTATCTGGAGCAGGGCCACAATGCAGTCAAGGGAAGATATTGCTACCAGGGTGTTGCAAGAAACTGGTGCTGTTCTTCTTCATCCATATAATGATGGGCGCATTATAAGTGGGCAGGGTACCGTATCACTGGAACTTCTGGAGCAAGCCCCACAAATAGACACTATAATGGTTCCAATAAGCGGAGGTGGTTTGATATCAGGGGTGGCATTGGCTGCTAAGTCCATCAACCCTTCCATTCGAGTATTTGCTGCTGAGCCGAAGGGAGCTAATGATGCAGCTCAATCAAAAAATGCTGGCAGGATTATAACATTGCCTGAGACCAACACCATTGCTGATGGGCTTCGAGCTTCTCTTGGAGATCTTACCTGGCCTGTAGTACGAGATCTCGTTGATGATATCATAGTCGTGGAGGATAAGGAGATAATCGAAGCCATGAAACTCTGTTATGAGATTCTGAAGGTTGCAGTAGAGCCTAGTGGAGCTATAGGTCTTGCCGCGGTTCTGTCTGACAGTTTCAAGAAAAATCCTGCTTGGAAGAACTGCAGGAACGTTGGAATTGTACTTTCGGGGGGCAATGTTGATCTGGGTGTGCTTTGGGATTCATTGGGTAAATAA 1002 45.61 MEAENEIRSKRYAADISSIREAQVRINSFIHKTPVLTSETLNSLAGRGLFFKCECFQKGGAFKFRGACNAIFSLDDEQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPENAPRCKVENVIRYGGQVIWSRATMQSREDIATRVLQETGAVLLHPYNDGRIISGQGTVSLELLEQAPQIDTIMVPISGGGLISGVALAAKSINPSIRVFAAEPKGANDAAQSKNAGRIITLPETNTIADGLRASLGDLTWPVVRDLVDDIIVVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDSFKKNPAWKNCRNVGIVLSGGNVDLGVLWDSLGK* 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3200565 3204790 + Vvi2g337 Vvi2g337 783036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g337 333 Pfam Pyridoxal-phosphate dependent enzyme 28 319 IPR001926 -
Vvi2g337 333 Gene3D - 62 158 IPR036052 -
Vvi2g337 333 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 16 325 IPR036052 -
Vvi2g337 333 PANTHER - 1 43 - -
Vvi2g337 333 PANTHER - 31 333 - -
Vvi2g337 333 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 31 333 - -
Vvi2g337 333 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 1 43 - -
Vvi2g337 333 CDD Thr-dehyd 16 323 - -
Vvi2g337 333 Gene3D - 25 323 IPR036052 -
Vvi2g337 333 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 54 67 IPR000634 GO:0006520|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g337 K12235 SRR; serine racemase [EC:5.1.1.18] - vvi:100247899 634.795
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g337 . Blo03g00210 Bda06g00086 . . Bpe07g00113 . . . . . . . . . . Cpe05g00324 . . . . . . . . . . . . . . . . . Cone9ag0772 . Csa05g00294 Chy09g01212 . . . . . . . . Bma12g00086 . . . . . . . . . Bhi12g00237 . . . . . . . . . . . . . Lsi09g00273 . . Cme09g01749
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013496 1 2 1 2 1 1 0 0 1 1 0 1 0 1 1 0 0 2 1 1 1 1 0 1 1 0 1 1 2 1 26