Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g338 ATGGCTTCAACATTTATTGGGAATTCGACATCAATCCAAGAGATGTTCAGGAGGGGAATGGACGAGATGGAATTCACAGAAGCTGAGAGCAACATGAATGATTTGGTGTCAGAGTACCAGCAATACCAGGATGCAACTGCAGATGAAGAAGGTGATTATGAAGACGAGGAAGAGTATCAGGAGGACGAGGCATAA 195 44.1 MASTFIGNSTSIQEMFRRGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGDYEDEEEYQEDEA* 65
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3205256 3205706 - Vvi2g338 Vvi2g338 783037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g338 64 Coils Coil 25 45 - -
Vvi2g338 64 PANTHER TUBULIN 19 61 IPR000217 GO:0005874|GO:0007017
Vvi2g338 64 PANTHER TUBULIN 1 18 IPR000217 GO:0005874|GO:0007017
Vvi2g338 64 MobiDBLite consensus disorder prediction 45 64 - -
Vvi2g338 64 MobiDBLite consensus disorder prediction 27 64 - -
Vvi2g338 64 PANTHER TUBULIN BETA-2 CHAIN 1 18 - -
Vvi2g338 64 PANTHER TUBULIN BETA-2 CHAIN 19 61 - -
Vvi2g338 64 SUPERFAMILY Tubulin C-terminal domain-like 1 46 IPR008280 -
Vvi2g338 64 MobiDBLite consensus disorder prediction 30 44 - -
Vvi2g338 64 Gene3D Helix hairpin bin 12 63 IPR023123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g338 K07375 TUBB; tubulin beta - pda:103701855 83.5741
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g338 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .