Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g339 ATGCGTGAGATTCTCCACATCCAAGGCGGCCAATGCGGCAACCAGATCGGAGCCAATTGTGGCCGGTTTGTTCCTAGGGCGGTTCTCATGGATCTTGAACCAGGGACGATGGACAGCGTCAGATCTGGGCCGTATGGACAGATTTTCCGGCCGGATAACTTTGTGTTTGGGCAGTCCGGCGCCGGGAACAACTGGGCCAAGGGTCATTATACGGAGGGAGCGGAGCTTATCGACTCTGTTCTCGATGTTGTGAGGAAGGAGGCTGAGAACTGTGACTGTCTACAAGGTTTCCAGGTTTGTCACTCATTGGGAGGCGGGACCGGCTCTGGAATGGGAACGCTGCTGATCTCAAAGATAAGGGAAGAGTACCCTGATAGGATGATGCTAACATTCTCCGTGTTTCCATCTCCGAAGGTGTCCGATACGGTGGTTGAGCCTTACAACGCCACACTATCTGTTCACCAGCTTGTTGAAAATGCAGATGAGTGTATGGTTCTGGACAACGAAGCTCTTTACGATATTTGCTTCCGTACACTCAAGCTCACCACGCCCAGTTTTGGTGACTTGAACCATCTAATTTCTGCCACAATGAGTGGAGTCACATGCTGCCTCCGCTTCCCTGGCCAACTGAATTCAGATCTTCGCAAGCTGGCATCCCAGAACTTACCCAGCAGATGTGGGATGCAAAGAACATGA 696 51.72 MREILHIQGGQCGNQIGANCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLASQNLPSRCGMQRT* 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3205705 3208737 - Vvi2g339 Vvi2g339 783038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g339 231 SMART Tubulin_4 14 208 IPR003008 GO:0005525
Vvi2g339 231 Gene3D Tubulin/FtsZ, GTPase domain 1 226 IPR036525 -
Vvi2g339 231 PANTHER TUBULIN 1 20 IPR000217 GO:0005874|GO:0007017
Vvi2g339 231 PANTHER TUBULIN 18 223 IPR000217 GO:0005874|GO:0007017
Vvi2g339 231 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Vvi2g339 231 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 104 110 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vvi2g339 231 PRINTS Beta-tubulin signature 52 63 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi2g339 231 PRINTS Beta-tubulin signature 72 90 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi2g339 231 PRINTS Beta-tubulin signature 116 128 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi2g339 231 PRINTS Beta-tubulin signature 176 188 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi2g339 231 PRINTS Beta-tubulin signature 194 203 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi2g339 231 PRINTS Beta-tubulin signature 209 222 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi2g339 231 Pfam Tubulin/FtsZ family, GTPase domain 3 175 IPR003008 GO:0005525
Vvi2g339 231 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 207 IPR036525 -
Vvi2g339 231 PRINTS Tubulin signature 15 34 IPR000217 GO:0005874|GO:0007017
Vvi2g339 231 PRINTS Tubulin signature 57 68 IPR000217 GO:0005874|GO:0007017
Vvi2g339 231 PRINTS Tubulin signature 70 94 IPR000217 GO:0005874|GO:0007017
Vvi2g339 231 PRINTS Tubulin signature 96 114 IPR000217 GO:0005874|GO:0007017
Vvi2g339 231 PRINTS Tubulin signature 115 136 IPR000217 GO:0005874|GO:0007017
Vvi2g339 231 PRINTS Tubulin signature 140 153 IPR000217 GO:0005874|GO:0007017
Vvi2g339 231 PRINTS Tubulin signature 154 174 IPR000217 GO:0005874|GO:0007017
Vvi2g339 231 PANTHER TUBULIN BETA-6 CHAIN 18 223 - -
Vvi2g339 231 PANTHER TUBULIN BETA-6 CHAIN 1 20 - -
Vvi2g339 231 CDD beta_tubulin 2 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g339 K07375 TUBB; tubulin beta - aof:109824970 433.721
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g339 Vvi16g688 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g339 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015897 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 8