Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g34 ATGTATTCTCTACAATCGCTTCCCCTCATTTCTTCTTCTTCTGTTCATAGGCCAGCGCCTGCAAAGCAACCCCGATTAGCTGAGCCCAGAGACAAATATCCCCACATTCACACACTTTCCGATTCCTTAACGGCCGTGCGTGTGTTGAGTTCATGCGCTGCAAACAGGGACCTGAGACTAGGCTCTTGCATTCACACCAACATACTCAAGTCTGGGCTCCACACAAATGTCTTTGTCGCCAATTCCCTCATGGATATGTACGCAAAATGTGGGCGTATAGAGGATGCTGCAAAATTGTTTGATCATATGCCTGACAAAACTGTGGTATCATGGACATCAATGATGTCTGGTCACTGCCAAAGAGGAGCTTTTGATGAAGTGATATCCATCTTTTGGCGGATGTTGGAGACCCTGCAGCCCAATGAATACACTCTAGCAGTGATTCTACAAGCTTGCGCCCAAAAACGGGACTTGAAATTGGTTCAATTGATCCATTGTCACATTATAAAAACCGGGTTTGTGATGGATGCTTTCTTGCAGAATTCTTTGATTGATGGGTACACAAAATCTGGGACACTGGTGGCTGCAGAGAAGCTGATGAAGAGATTGATTTGTAGGGATGTTGTGTCTTGGACTTCAGTCATTTCAGGTTGTGTACTCAATGGAATGGTGGAGAAGGCCCTTCTCTTCTTCTTTGAGATGCAGGAAGATGGGGTCTCACCAAATACGGTAACAATTCTCAGCATCTTGCAGGCTTGCTCTTTGATTAATGAATGGCAAGTTTTTCAGTGGGTTCATGGCTTGGTTATGAAAGCGGAATGGCGAGAAAATGTTTTCGTGATGAATTCCCTTGTTGAGATGTATTCCATTAATGGATATTTCAAGGAAGGATTTCAGATTTTTTGCAACTTCTGTTTCGAGGGTGACGGCCAGTATCTTAGTACAGAGACGATAGCCACGCTTCTGCAGGGATGCAGCCATTCTAAGTGTCTGAAGCTTGGAGAGCAGATTCATGGGTACCAGATTAAACATGGGTTCTTTCCTTGCACCATTGTTGAAAATTCTCTGATTTACATGTACGCAGAAAATGAAAGAGACGATGCAGCTTTTCAACTCTTCAGGAAGATGAGCTGCAGGGACATAGTTTCATGGAATACCATGATTTCATCCCTTGTAAAGGGAAGCAGTTCCTATCAGGCCTTGATGCTGCTGAGTGAGGTTCACAGCAATGGTGGATCTGATATGATTTACCCGGATTTTGTTACAATATTGGCATCAATTCAAGCCTGCTCAAGCTTGGCATCCCTGCAACTAGGTCAAGTAATTCATGGATACATAACCAGAGCAGGTTTGATTTGTGATATTTTTGTCCAGAATTCACTGGTGGACATGTATGGAAAATGTGGCAGGTTGCATTTAGCTGAGAAAGTCTCTGAGGAAATGCCTGTAAGAGATCTGGGTTCATGGAATTCACTCATTGCTGCATATGGGATCAATGGAAATGGAATCTCTGCCCTGAATGTCTTCAAGCAACTGAAGAACACAGGTGCCCACCGGCCAAATGCAATTACATTCACCAACATTCTCTCAGCTTGCGCTCATGCAGGGCTTGTAGCAGAAGGCTTTGAAATATTCAAGAGCATGAAGAGAGAGTACAGCCTGGAGCCAAGAATCGAACACTTTGCCTGTATGGTTGATCTCTTGGGGAGGGCAGGGAGGCTTGAAGAGGCAGAAGCTTTCATTCAGAAGATGCCATTTGAGCCGGGTCCAGAAGTGTGGGGTGCCTTACTGGGTGGTTGTGGACTCTTTGGAAACCTAGATATAGCTGAAAGGGTAGCAAAGAAACTTTATATTTTGGAGCCGAAGAGCAGAGCTTGGAGAGTTGCATTATCAAATGTTTATGCAAGTGTCAACAAATGGGAGGATGCCGCAAAGGTGAGAGCAGAAATGAGAAGATCTGAAGAACTGCAGAAGGAAGGTGGGTGGAGCAGTGTGGAGGTGAGAGGGCAAGAGTTCCGGTTTATGGTAGGTGATACAATGCATCCAGAGGCTAGGATGGTCTATGCAGTTTTGAAAGGAATAAATGAACATATCAGAGATGCTTGCAGAATAGTCTGA 2118 44.52 MYSLQSLPLISSSSVHRPAPAKQPRLAEPRDKYPHIHTLSDSLTAVRVLSSCAANRDLRLGSCIHTNILKSGLHTNVFVANSLMDMYAKCGRIEDAAKLFDHMPDKTVVSWTSMMSGHCQRGAFDEVISIFWRMLETLQPNEYTLAVILQACAQKRDLKLVQLIHCHIIKTGFVMDAFLQNSLIDGYTKSGTLVAAEKLMKRLICRDVVSWTSVISGCVLNGMVEKALLFFFEMQEDGVSPNTVTILSILQACSLINEWQVFQWVHGLVMKAEWRENVFVMNSLVEMYSINGYFKEGFQIFCNFCFEGDGQYLSTETIATLLQGCSHSKCLKLGEQIHGYQIKHGFFPCTIVENSLIYMYAENERDDAAFQLFRKMSCRDIVSWNTMISSLVKGSSSYQALMLLSEVHSNGGSDMIYPDFVTILASIQACSSLASLQLGQVIHGYITRAGLICDIFVQNSLVDMYGKCGRLHLAEKVSEEMPVRDLGSWNSLIAAYGINGNGISALNVFKQLKNTGAHRPNAITFTNILSACAHAGLVAEGFEIFKSMKREYSLEPRIEHFACMVDLLGRAGRLEEAEAFIQKMPFEPGPEVWGALLGGCGLFGNLDIAERVAKKLYILEPKSRAWRVALSNVYASVNKWEDAAKVRAEMRRSEELQKEGGWSSVEVRGQEFRFMVGDTMHPEARMVYAVLKGINEHIRDACRIV* 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 422316 424434 + Vvi2g34 Vvi2g34 782733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g34 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Vvi2g34 705 Gene3D Tetratricopeptide repeat domain 38 137 IPR011990 GO:0005515
Vvi2g34 705 Gene3D Tetratricopeptide repeat domain 504 676 IPR011990 GO:0005515
Vvi2g34 705 Gene3D Tetratricopeptide repeat domain 280 432 IPR011990 GO:0005515
Vvi2g34 705 Gene3D Tetratricopeptide repeat domain 138 277 IPR011990 GO:0005515
Vvi2g34 705 PANTHER OS02G0680500 PROTEIN 28 96 - -
Vvi2g34 705 PANTHER OS02G0680500 PROTEIN 86 184 - -
Vvi2g34 705 PANTHER OS02G0680500 PROTEIN 180 702 - -
Vvi2g34 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 76 110 IPR002885 -
Vvi2g34 705 TIGRFAM PPR: pentatricopeptide repeat domain 81 105 IPR002885 -
Vvi2g34 705 TIGRFAM PPR: pentatricopeptide repeat domain 209 243 IPR002885 -
Vvi2g34 705 TIGRFAM PPR: pentatricopeptide repeat domain 523 555 IPR002885 -
Vvi2g34 705 PANTHER OS07G0578800 PROTEIN-RELATED 180 702 IPR045215 GO:0003723|GO:0009451
Vvi2g34 705 PANTHER OS07G0578800 PROTEIN-RELATED 86 184 IPR045215 GO:0003723|GO:0009451
Vvi2g34 705 PANTHER OS07G0578800 PROTEIN-RELATED 28 96 IPR045215 GO:0003723|GO:0009451
Vvi2g34 705 Pfam PPR repeat family 106 153 IPR002885 -
Vvi2g34 705 Pfam PPR repeat family 206 253 IPR002885 -
Vvi2g34 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 521 551 IPR002885 -
Vvi2g34 705 Pfam E motif 604 666 IPR046848 -
Vvi2g34 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Vvi2g34 705 Pfam PPR repeat 354 380 IPR002885 -
Vvi2g34 705 Pfam PPR repeat 488 514 IPR002885 -
Vvi2g34 705 Pfam PPR repeat 523 551 IPR002885 -
Vvi2g34 705 Pfam PPR repeat 459 483 IPR002885 -
Vvi2g34 705 Pfam PPR repeat 382 411 IPR002885 -
Vvi2g34 705 Pfam PPR repeat 563 584 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g34 - - - vvi:104881105 1415.21
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g34 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009418 0 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 0 0 2 3 2 1 1 1 2 29