Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g341 ATGAGAAGTTCTAGTTCACTTCAGCTTCTGTGGGTTGTTTTTGGAGTTCTTTTTGCGAGTTGTGATGCCTTTGCATCAAATGAGGTCTCAGCTCTTAATACCTTAAAGGAAGGCATATATGAAGACCCACTTACGGTTCTGTCCACTTGGAACACCGTTGATTCAGATCCTTGTGATTGGTCTGGCATTACGTGCTCTGAAGCTCGAGATCATGTTATAAAAATAAATATTTCTGGGTCATCATTGAAGGGATTTCTCACACCAGAATTGGGTCAACTCTCTTCCTTGCAAGAACTAATTTTGCATGGGAACAACCTGATTGGGGTAATACCTAAAGAAATTGGCTCTTTGAAAAACCTCAAGGTCTTGGATCTGGGGATGAATCAATTGACGGGTCCAATCCCTCCAGAGATTGGCAATTTGACTAGCATCGTTAAAATAAACCTCGAGTCCAATGGGTTGAGTGGACGCCTGCCTCCTGAGCTTGGCAACTTGAGACACCTCGAGGAGCTTCGGCTGGATAGGAACAGGCTTGAAGGAACTGTTCCTGGCAGTAACACTTCGAATTTTGTATCTGACGTTAATGGGATGTATGCCTCAAGCAGGAACATCACTGGCCTCTGTCGCTCATCTCAGTTTAAAGTTGCAGATTTCTCATACAACTTTTTTGTTGGAAGCATACCTAAGTGCTTGTCATATCTGCCAAGAACAAGTTTTCAAGGGAACTGCCTTCAAGACACAGCTCCCAGACAACGGTCTACAGTGCAATGTGCTGTTCCTCCACCTGCCAAAAGCCATCCAGGAGTCGGCCCAAAGCACCAGCCTACCTTAGATGGACCGAAGCATCAGGACACATCAAAACCTGCCTGGCTTTTAGCTCTGGAAATAGTGACAGGAACCATGGTTGGCTCTCTCTGTATCATTGCTCTTCTCACTGCTCTTCAGAGATGCAAAAGCAAATCTTCTATCATAATCCCTTGGAAAAAATCAGCAAGTGAGAAGGAACATATGCAAGTATACATAGACTCTGAGATGTTGAAGGATGTATTTAGATTCAGCAGGCAAGAGCTTGAAGTAGCATGTGAAGATTTCAGCAACATAATAGGCTCCTCACCAGATAGTTTAGTCTACAAAGGCACTATGAAAGGTGGGCCCGAGATTGCTGTGATATCCCTATGCATCAAAGAGGAGCATTGGATGGGCTATCTCGAGCTCTATTTTCAGAAGGAGGTGGCAGATTTGGCAAGATTAAATCATGAGAATACAGGAAAATTACTGGGCTATTGTCGAGAGAGCTCTCCATTTACAAGAATGCTGGTTTTTGAATATGCATCGAATGGAACGCTCTATGAGCACCTTCATTATGGAGAAGGATGCCAATTATCATGGACGCGGCGCATGAAGATTATTATAGGGATTGGCCGTGGCCTAAAATATCTGCACACAGAACTTGATCCACCATTTACCATATCCGAGTTAAATTCGAGTGCTGTGTATATCACAGAAGATTTTTCTCCCAAGCTAGTTGACTTTGAAAGTTGGAAGTCAATTCTTTCAAGATCAGAAAAGAACTCAGGCTCCATTGGCAGCCAAGGTGCCATCTGTGTTCTTCCAAATTCTCTGGAGGGACGCCATCTAGATGTTCAAGGCAACGTTTATGCATTTGGTGTACTTTTGCTGGAGATTATGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGGGCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTGGTGGATCCTGAGTTGAAACATTTCAGATATGATGACCTTAAAGTCATATGTGAGGTGGTGAATCTTTGCATTCATCCCGAACCCACCAAGCGGCCATCCATGCAAGAACTGTGCACCATGTTGGAGACCAAAATTGACACATCCATATCTTCCGAGCTTAAGGCATCTTCTCTGGCGTGGGCTGAGCTTGCACTTTCATCGTGA 1983 44.13 MRSSSSLQLLWVVFGVLFASCDAFASNEVSALNTLKEGIYEDPLTVLSTWNTVDSDPCDWSGITCSEARDHVIKINISGSSLKGFLTPELGQLSSLQELILHGNNLIGVIPKEIGSLKNLKVLDLGMNQLTGPIPPEIGNLTSIVKINLESNGLSGRLPPELGNLRHLEELRLDRNRLEGTVPGSNTSNFVSDVNGMYASSRNITGLCRSSQFKVADFSYNFFVGSIPKCLSYLPRTSFQGNCLQDTAPRQRSTVQCAVPPPAKSHPGVGPKHQPTLDGPKHQDTSKPAWLLALEIVTGTMVGSLCIIALLTALQRCKSKSSIIIPWKKSASEKEHMQVYIDSEMLKDVFRFSRQELEVACEDFSNIIGSSPDSLVYKGTMKGGPEIAVISLCIKEEHWMGYLELYFQKEVADLARLNHENTGKLLGYCRESSPFTRMLVFEYASNGTLYEHLHYGEGCQLSWTRRMKIIIGIGRGLKYLHTELDPPFTISELNSSAVYITEDFSPKLVDFESWKSILSRSEKNSGSIGSQGAICVLPNSLEGRHLDVQGNVYAFGVLLLEIMSGRPPYCKDKGCLVEWARDYLDLPEAMSYVVDPELKHFRYDDLKVICEVVNLCIHPEPTKRPSMQELCTMLETKIDTSISSELKASSLAWAELALSS* 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3216346 3221693 - Vvi2g341 Vvi2g341 783040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g341 660 MobiDBLite consensus disorder prediction 254 283 - -
Vvi2g341 660 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Vvi2g341 660 Gene3D Ribonuclease Inhibitor 141 258 IPR032675 -
Vvi2g341 660 Gene3D Phosphorylase Kinase; domain 1 333 443 - -
Vvi2g341 660 Pfam Protein tyrosine and serine/threonine kinase 366 633 IPR001245 GO:0004672|GO:0006468
Vvi2g341 660 PANTHER PROTEIN MALE DISCOVERER 2 10 660 - -
Vvi2g341 660 SUPERFAMILY Protein kinase-like (PK-like) 339 635 IPR011009 -
Vvi2g341 660 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Vvi2g341 660 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vvi2g341 660 Gene3D Ribonuclease Inhibitor 27 140 IPR032675 -
Vvi2g341 660 SMART LRR_typ_2 117 141 IPR003591 -
Vvi2g341 660 SMART LRR_typ_2 93 116 IPR003591 -
Vvi2g341 660 SMART LRR_typ_2 165 188 IPR003591 -
Vvi2g341 660 Gene3D Transferase(Phosphotransferase) domain 1 444 651 - -
Vvi2g341 660 ProSiteProfiles Protein kinase domain profile. 362 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g341 660 SUPERFAMILY L domain-like 27 236 - -
Vvi2g341 660 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 660 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g341 - - - vvi:100258246 1281.16
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g341 . . Bda06g00084 . . Bpe07g00114 . . . Cmo16g01091 Cma02g01466 Cma15g01218 Car02g01230 Car15g01098 . Cpe14g00501 Cpe05g00322 . . . . . . . Cla07g00765 . . . . . . Cone8ag0315 . . Cone9ag0768 . Csa05g00296 Chy09g01210 Cme07g01624 . . . . . . . . . Cmo02g01503 Cmo15g01283 . Cma16g00589 . . . Cpe13g00162 Bhi12g00234 . . . . . . Cla01g00277 . . . . . . Lsi09g00275 Csa04g00601 Chy07g01211 Cme09g01747
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001701 1 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 3 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76539 PF07714 PK_Tyr_Ser-Thr 5.90E-20 CL0016 Vvi PK