Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g342 ATGAAGAAAGCACCTGCAGCTTGCAGTATTACTATCTATACGTTTTTCCTCTTCTTCATTCTCTTTGTTGCAGCTGCCTTCATCTCTTTTTTCTGCTTCAGCAGCCGTTTTATCTTTCTGGTTAATAATTCTGAGCGCAAAGCAGTACCAATCTCTGAAAATCACCGGAAAACGCCGAGGCCAATTGTAGTCCCACTCAACTGCTCCGCCAGGAATCTCACTCAAACCTGCCCAGGAAATTACCCAACAACATTTGATACAGACTTGGCATGGAAACCTGTTTGCCCAGATTACTTTAGATGGATCCATGAAGATTTGAAGCCATGGAAGACCACAGGGATTAGTAGGGATATGGTGGAGAGAGCTAAGAGGAGTGCCCATTTCAGACTGGTTATTGTGAAGGGCAAAGTGTACATAGAGAAGTACAAGAAGTCGATACAGACTAGAGATGTGTTCACAATATGGGGTATTCTGCAACTTCTCAGAAGGTACCCCGGAAAGTTACTGGACTTGGAGCTGACGTTTGACTGCAATGACAGGCCGGTGATCAGATCAGGCGACCACCGTGGACCCAACTCGACGAGCCCACCACCTCTGTTTCGCTACTGTGGGGATCGGTGGACTTTGGATGTGGTGTTTCCTGACTGGTCCTTCTGGGGTTGGCCTGAGATTAATATGAAGCCATGGGGGAATTTATTGAAGGACCTAAAAGAAGGCAACAACAGGACCAAATGGATGGAAAGGGAACCATATGCCTACTGGAAGGGAAACCCTTTAGTAGCTGAAACCCGGAGAGACCTCCTTACTTGCAATGTCTCTGATGTACAGGACTGGAATGCTCGACTATTTGTCCAGGACTGGATGCTTGAATCTCAACAAGGATATAAGCAATCAGATGTATCAAACCAGTGCACTCATAGATACAAGATCTACATTGAAGGGTGGGCATGGTCTGTCAGTGAGAAATACATTCTTGCTTGTGATTCTGTTACATTGATGGTGAAGCCTCGTTACTATGATTTCTTCATGAGAAGTCTGCAACCCGTGCACCACTACTGGCCTATTAAGGACAACGACAAGTGCAGATCCATTAAGTTTGCTGTGGACTGGGGCAACAGCCATAAGCAGAAGGCACAAGCCATTGGGAAAGCGGCAAGCGACTTTATTCAAGAAGAGCTCAAGATGGACTATGTCTATGACTACATGTTTCATCTATTGAATGAGTATGCAAAGCTTTTGCGATTCAAGCCGACCATACCTGAGGGAGCTGTGGAAGTCTGCTCTGAGACAGTGGCATGCTCTGCAGAAGGGGTAGAGAAGAAATTCATGATGGAATCCTTGGTGAATAGTCCTTCTGTTACAAGCCCATGCGCCCTGCCCCCTCCCTATGATCCTCCAGTCCTTGGAGCATTGCTTAGGAAGAAAGCCAACTCCATAAAGCAAGTGGAGAGATGGGAGAATAGGTATTGGGAGAATTTAAATCAGCAGCATTAG 1494 46.05 MKKAPAACSITIYTFFLFFILFVAAAFISFFCFSSRFIFLVNNSERKAVPISENHRKTPRPIVVPLNCSARNLTQTCPGNYPTTFDTDLAWKPVCPDYFRWIHEDLKPWKTTGISRDMVERAKRSAHFRLVIVKGKVYIEKYKKSIQTRDVFTIWGILQLLRRYPGKLLDLELTFDCNDRPVIRSGDHRGPNSTSPPPLFRYCGDRWTLDVVFPDWSFWGWPEINMKPWGNLLKDLKEGNNRTKWMEREPYAYWKGNPLVAETRRDLLTCNVSDVQDWNARLFVQDWMLESQQGYKQSDVSNQCTHRYKIYIEGWAWSVSEKYILACDSVTLMVKPRYYDFFMRSLQPVHHYWPIKDNDKCRSIKFAVDWGNSHKQKAQAIGKAASDFIQEELKMDYVYDYMFHLLNEYAKLLRFKPTIPEGAVEVCSETVACSAEGVEKKFMMESLVNSPSVTSPCALPPPYDPPVLGALLRKKANSIKQVERWENRYWENLNQQH* 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3227218 3231782 - Vvi2g342 Vvi2g342 783041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g342 497 PANTHER O-GLUCOSYLTRANSFERASE RUMI-LIKE PROTEIN (DUF821) 19 493 - -
Vvi2g342 497 Pfam Glycosyl transferase family 90 92 486 IPR006598 -
Vvi2g342 497 PANTHER KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED 19 493 - -
Vvi2g342 497 SMART cap10 167 416 IPR006598 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g342 - - - vvi:100263289 1032.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g342 Vvi16g671 ECH
Vvi2g342 Vvi15g906 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g342 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00297 Chy09g01209 . . . . . . . . . . . . . . . . . . Bhi12g00232 . . Lac11g2111 Hepe06g1560 . Lcy12g1668 Cla01g00278 Cam01g0288 Cec01g0281 Cco01g0294 Clacu01g0287 Cmu01g0274 Cre09g2233 Lsi09g00276 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000256 4 8 4 4 3 4 1 4 5 4 4 4 6 5 5 5 4 11 3 4 5 4 5 6 6 7 5 8 8 9 155