Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g343 ATGGCCAAGGTCCACCCTCAAAGACCTGCTCCTCCTTCTCCACCTTCTGATTCTTACATCACTTCAAGGAGGGAGACTTTTACTCTGTGGATGAAATCACTTGTCATACGAGGAAATGGATACACTGTCTTCAATTCTGATGGCGAGATTGTTTATCGGATGGATAATTATGACAAGAAGTGCAGCAGTGAAGTTTATCTCATGGATCTTCAGGGCAAAGTTCTCTTCACCATACTTCGAAGGAAGCTACGCGTTTTTGGAAGATGGGAGGGGTATAAATGCAGTGGTTCAAAGGTGGGCAGTCAGAAGCCATGTTTTCAAGTCAGAAAACATTGCAGAATTCTGGGAGGAGGTTCATCATGTGAAGTTACAGTGAGGCCTAATGAAGCTCAATCATATCATTACAGAATACAGGGCTTGGCCGGTAAATCAACATTCAAGATTGTAAACAGTGAAGGAGGAGTCATGGCAGAGGTAAAGCAAAAGCAAACATCTTCAGGAGTAGTGCTGGGAGATGATGTATTGGACTTGGTGGTGGAGCCCCATGTTGATCATTCCCTTGTCATGGCTCTTGTGGCAATGGCCAAGGTCCACCCTCAAATGCCTGCTGCTGTTCCTCCTCCTCCTCCTCCACCTTCTGATTCTTGTATCACTTCAAGGAGGGAGACTTTTACTCTATGGATGAAATCACTTGTCATACAAGGAAATGGATACACTGTCTTCAATTCTGATGGTGAGATTGTTTACCGTATTGATAATTATGACAAGAAGTGCAGCAGTGAAGTTTATCTCATGGATCTTCAAGGCAAAGTTCTCTTCACCATACTTCAAAGGAAACTACATGTTTTTGGAAGATGGGAGGGGTATAAATGCAATGGTTCAAAGGCGGACAGTCAGAAGCCATGTTTTCAAGTCAGAAAACATTGCAGAATTCTGGGAGGAGGTTCATCATGTGAAGTTACAGTGAGGCCTAATGAAGCTCAATCATGTTATTACAGAATACAGGGCTTGGCTGGTAAATCAACATTCAAGATTGTAAACAGTGAAGGAGGAGTCATGGCAGAGGTAAAGCAAAAGCAAACATCTTCAGGAGTAGTGTTGGGAGATGATGTGCTGAACTTGGTGGTGGAGCCCCATGTTGATCATTCCCTTGTCATGGCTCTTGTGGCAGTGTGTGGATTGATCCACCACAGAATGTGA 1200 43.75 MAKVHPQRPAPPSPPSDSYITSRRETFTLWMKSLVIRGNGYTVFNSDGEIVYRMDNYDKKCSSEVYLMDLQGKVLFTILRRKLRVFGRWEGYKCSGSKVGSQKPCFQVRKHCRILGGGSSCEVTVRPNEAQSYHYRIQGLAGKSTFKIVNSEGGVMAEVKQKQTSSGVVLGDDVLDLVVEPHVDHSLVMALVAMAKVHPQMPAAVPPPPPPPSDSCITSRRETFTLWMKSLVIQGNGYTVFNSDGEIVYRIDNYDKKCSSEVYLMDLQGKVLFTILQRKLHVFGRWEGYKCNGSKADSQKPCFQVRKHCRILGGGSSCEVTVRPNEAQSCYYRIQGLAGKSTFKIVNSEGGVMAEVKQKQTSSGVVLGDDVLNLVVEPHVDHSLVMALVAVCGLIHHRM* 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3236090 3242957 + Vvi2g343 Vvi2g343 783042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g343 399 PANTHER - 2 194 IPR007612 -
Vvi2g343 399 PANTHER - 195 398 IPR007612 -
Vvi2g343 399 MobiDBLite consensus disorder prediction 1 20 - -
Vvi2g343 399 Pfam LURP-one-related 16 194 IPR007612 -
Vvi2g343 399 Pfam LURP-one-related 213 391 IPR007612 -
Vvi2g343 399 Gene3D - 213 399 IPR038595 -
Vvi2g343 399 Gene3D - 16 199 IPR038595 -
Vvi2g343 399 SUPERFAMILY Tubby C-terminal domain-like 14 194 IPR025659 -
Vvi2g343 399 PANTHER PROTEIN LURP-ONE-RELATED 4 2 194 - -
Vvi2g343 399 PANTHER PROTEIN LURP-ONE-RELATED 4 195 398 - -
Vvi2g343 399 SUPERFAMILY Tubby C-terminal domain-like 209 397 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g343 - - - vri:117930765 396.356
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g343 . Blo03g00204 . . . . . Bma14g00616 . . Cma02g01467 Cma15g01217 . Car15g01097 . . Cpe05g00320 . . . . . . . . . . . . . . . . . . . . Chy09g01208 . . . Bda07g00476 . . Bpe11g00653 . . . Cmo02g01504 Cmo15g01282 . . . . . . Bhi12g00231 . . . . . . Cla01g00279 Cam01g0289 Cec01g0282 Cco01g0295 Clacu01g0288 Cmu01g0275 Cre09g2232 Lsi09g00277 . . Cme09g01745
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004305 2 2 0 3 3 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 43