Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g346 ATGAGACAAGCAGGGACGTATTCAGGAATATTGAATGGTGGGATGTCAGGGAGAACCGGGCCACACTTGTTGCCCTTGGCCAGGATCAAGAAGATCATGAAGAGGTCTGGCGAGGATGTGAAGATGATATCTGGGGAGGCTCCGATTATTTTCTCAAAAGCCTGTGAGCTGTTCATAGAGGAGTTAACTCAGAGGTCGTGGAAGGTGACACTGCAGGGAAAGAGGAGGACACTTCACAAGGAAGATGTTGCCTCTGCGGTTATTGCTACTGATGTCTTTGATTTTCTTGTCAACGTGGTGTCTAAGTCTGGTGCTAACTCTGAGGATACTCCTGTTGTGATGGAGAGATGA 351 47.86 MRQAGTYSGILNGGMSGRTGPHLLPLARIKKIMKRSGEDVKMISGEAPIIFSKACELFIEELTQRSWKVTLQGKRRTLHKEDVASAVIATDVFDFLVNVVSKSGANSEDTPVVMER* 117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3263714 3264065 + Vvi2g346 Vvi2g346 783045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g346 116 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 87 IPR003958 -
Vvi2g346 116 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 108 - -
Vvi2g346 116 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 108 - -
Vvi2g346 116 SUPERFAMILY Histone-fold 17 96 IPR009072 GO:0046982
Vvi2g346 116 Gene3D Histone, subunit A 12 102 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g346 - - - vvi:100266714 229.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g346 Blo02g01104 . . Bda08g00526 Bpe05g00636 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g01623 . . . . . . Bma05g00812 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00602 Chy07g01210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014449 1 1 2 1 1 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 1 1 1 1 0 1 1 1 1 1 21
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14582 PF00808 CBFD_NFYB_HMF 1.20E-19 CL0012 Vvi TF