Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g347 ATGGGAGCAGAGGAAGCAAAGAAAGATACAAGTGAGGTAGCTACAGAGGACCAAGCTCAAGAGAAGAGTGTGATTCCACTGCCCGACCCTGTGGACAAGGTCTCTCGTTCAAAAACATCTGCCAATGTTGAAAAGGCAACAGACAACCCCAATGAGAAAAACTCAGGAGCAACGGCTGAAAGAGATGCTGTGCTTGCTGCAATCGAAACCGAGAAGAGGTTGGCCTTGATCAAAGCATGGGAAGAAAGCGAAAAGTCCAAAGCAGAGAACAGGGCACATAAAATGCAGTCGGCGACTGGAACATGGGAGAATAGCATGAAAGCATCTGCAGAGGCTCAACTGAAGAAGATGGAGGAAAAATTGGAGAAGAAGAAGGCAGAATATGGAGAGAGAATGAAGAACAAGATCGCTGAAATCCACAAGGCAACCGAAGAAAAGAGGGCAATGATTGAAGCCAAGCGCAGGGAAAATCTTCTCAAGATAGAGGAGGCAGCTGCCAAATACCGTGCGTCAGGAACTGCACCAAAGAAGCTTCATGGATGTCTCGGCAGCTTTGATTTTTAG 564 46.99 MGAEEAKKDTSEVATEDQAQEKSVIPLPDPVDKVSRSKTSANVEKATDNPNEKNSGATAERDAVLAAIETEKRLALIKAWEESEKSKAENRAHKMQSATGTWENSMKASAEAQLKKMEEKLEKKKAEYGERMKNKIAEIHKATEEKRAMIEAKRRENLLKIEEAAAKYRASGTAPKKLHGCLGSFDF* 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3274707 3276088 + Vvi2g347 Vvi2g347 783046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g347 187 MobiDBLite consensus disorder prediction 1 62 - -
Vvi2g347 187 Coils Coil 107 145 - -
Vvi2g347 187 PANTHER OS02G0117200 PROTEIN 11 182 - -
Vvi2g347 187 MobiDBLite consensus disorder prediction 1 16 - -
Vvi2g347 187 Pfam Remorin, C-terminal region 72 177 IPR005516 -
Vvi2g347 187 MobiDBLite consensus disorder prediction 83 109 - -
Vvi2g347 187 MobiDBLite consensus disorder prediction 35 56 - -
Vvi2g347 187 MobiDBLite consensus disorder prediction 93 108 - -
Vvi2g347 187 Pfam Remorin, N-terminal region 16 67 IPR005518 -
Vvi2g347 187 PANTHER REMORIN 1.4 11 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g347 - - - vvi:100263385 346.665
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g347 Vvi16g661 ECH
Vvi2g347 Vvi15g914 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g347 . . . . . . . . Cmo06g01081 . Cma02g01472 . Car02g01233 . . . Cpe05g00657 . . . . . . . . . . . . . . . Cone12ag0317 . Cone9ag0765 . . Chy09g01204 . . . . . . Bpe11g00655 . . . Cmo02g01507 . Cma06g01060 . Car06g00892 . Cpe08g00557 . Bhi12g00226 . . . . . . Cla01g00283 Cam01g0293 Cec01g0286 Cco01g0299 Clacu01g0292 Cmu01g0278 Cre09g2229 Lsi09g00282 . . Cme09g01741
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000535 3 7 5 4 4 3 4 3 2 3 3 3 4 3 3 4 3 7 3 3 2 3 3 3 3 3 3 6 4 3 107