Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g348 ATGCAGAATCAGCAGCAACAGCAGTGGCTGAGACGGATTCCAATTGCTACTGATTCGCCTGCGAATGAAGTTGAGAAGACAGTACAGTCCGAAGTCGTTGATTCGAGTTCCCAAGATTGGAAGGCACAGCTAAGGGTTCCTCCACCTGATACTCGCTACAAGACAGAGGATGTAACTGCTACAAAAGGAAATGAGTTTGAAGACTATTTTCTGAAACGGGAACTACTCATGGGGATATATGAAAAGGGATTTGAAAGACCTTCTCCCATCCAGGAAGAAAGTATTCCGATTGCTTTAACTGGAAGTGATATTCTTGCTAGAGCTAAAAATGGAACTGGGAAAACAGCTGCCTTTTGCATTCCTGCATTGGAAAAAATTGATCCAGATAATAATGTAATTCAAGTTGTTATACTTGTTCCAACAAGAGAGCTTGCTCTTCAGACATCACAAGTGTGCAAGGAACTTGGGAAGCATTTGAAGATTGAAGTCATGGTCACCACAGGAGGAACTAGTTTGAAGGATGACATCATGCGTTTGTATCAGCCTGTACATTTGTTGGTTGGAACTCCTGGAAGAATTCTGGATCTCTCTAAAAAAGGAATATGCATTTTGAAGGATTGTTCCGTGCTTGTTATGGATGAGGCTGATAAGCTGTTGTCTCCAGAGTTTCAACCTTCAGTGGAGCAACTGATTCGTTTTCTTCCTCAGAATCGGCAAATTTTAATGTTTTCAGCGACATTTCCTGTGACTGTCAAGGATTTTAAAGATAGATATCTGAAAAAGCCTTACGTTATTAATCTCATGGATGAGCTTACTCTCAAGGGTATCACTCAATATTATGCTTTTGTGGAAGAAAGACAGAAGGTTCACTGCCTAAACACTCTTTTCTCTAAGCTTCAAATCAATCAGTCGATAATTTTCTGCAACTCTGTCAATCGGGTTGAACTGTTGGCCAAAAAAATTACAGAGCTTGGTTATTCGTGCTTCTATATTCATGCTAAGATGCTGCAAGATCATCGAAACAGAGTATTTCATGACTTCCGTAATGGTGCATGCAGGAATCTGGTCTGCACTGATTTGTTTACAAGGGGGATAGACATTCAGGCAGTCAACGTTGTCATCAATTTTGATTTTCCCAAGAACTCTGAAACATATCTGCACAGGGTGGGTCGTTCTGGAAGGTTTGGACACCTTGGCCTGGCAGTTAATTTAATAACTTATGAAGACCGTTTCAACTTGTATAGGATCGAGCAGGAACTTGGGGCTGAAATAAAACAAATTCCTCCACACATAGATCAGGCTATTTACTGCAGGTGA 1317 40.85 MQNQQQQQWLRRIPIATDSPANEVEKTVQSEVVDSSSQDWKAQLRVPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPDNNVIQVVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGICILKDCSVLVMDEADKLLSPEFQPSVEQLIRFLPQNRQILMFSATFPVTVKDFKDRYLKKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGAEIKQIPPHIDQAIYCR* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3284194 3293203 - Vvi2g348 Vvi2g348 783047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g348 438 MobiDBLite consensus disorder prediction 1 40 - -
Vvi2g348 438 CDD DEADc_DDX6 66 266 - -
Vvi2g348 438 Pfam Helicase conserved C-terminal domain 290 396 IPR001650 -
Vvi2g348 438 SMART ultradead3 83 279 IPR014001 -
Vvi2g348 438 Gene3D - 21 268 IPR027417 -
Vvi2g348 438 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 2 438 - -
Vvi2g348 438 MobiDBLite consensus disorder prediction 22 40 - -
Vvi2g348 438 Pfam DEAD/DEAH box helicase 89 253 IPR011545 GO:0003676|GO:0005524
Vvi2g348 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 418 IPR027417 -
Vvi2g348 438 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 64 92 IPR014014 GO:0003724
Vvi2g348 438 SMART helicmild6 315 396 IPR001650 -
Vvi2g348 438 Gene3D - 269 438 IPR027417 -
Vvi2g348 438 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 95 265 IPR014001 -
Vvi2g348 438 CDD SF2_C_DEAD 276 405 - -
Vvi2g348 438 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 211 219 IPR000629 -
Vvi2g348 438 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 275 435 IPR001650 -
Vvi2g348 438 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 2 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g348 K12614 DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13] - vvi:100241111 866.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g348 Vvi15g916 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g348 . . . . . . . . Cmo06g01115 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00080 Chy09g01411 . . . . . . . . . . . . Cma06g01089 . Car06g00924 . Cpe08g00529 . . . . . . . . Cla01g00071 Cam01g0070 Cec01g0071 Cco01g0071 Clacu01g0071 Cmu01g0072 Cre09g2437 Lsi09g00051 . . Cme09g01955
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004275 2 1 2 2 2 1 2 1 1 1 1 0 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 2 42