Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g352 ATGACAAGCCCTGGTCCCAGCTCCAGAATACAGAGTGGTGCTGTCACCCCTCTTCATCCACGAGCTGGAGCAGCTGCTGCAGAGTCTCCTACCAACCGGCCTGATGATGGAAAGCAACAAAGCCACCGATTGCCCCTTCCACTGATAACAATTTCTAATTCTTGCCCTTTTTCTCCTACATATTCGACATCAACAACTCCCTCAGTACCACAAAGTCCTGGTAGGGCGGAAAACCCAATTAGCCCTGGATTACGCTGGAAGAAGGGTTGGCTCTTAGGGAGAGGCGCATTTGGGCATGTATATCTTGGGTTTAATAGTGAAAGTGGGGAGATGTGTGCAATGAAGGAGGTTACATTATTTTCAGATGATGCGAAGTCAAAGGAAAGTGCACAGCAGCTGGGCCAAGAAATTTCGCTCCTCAGTCGCTTAAGTCATCCAAATGTAGTGCAATACTATGGATCTGAGACAGTGGATGACAAACTCTACATATATTCGGAATATGTATATGGTGGTTCCATATATAAACTTCTTCAAGAGTATGGCCAGTTTGGTGAAATAGCTATTCATAGTTATACTCAACAAATTCTGTCAGGGCTTGCATATTTGCATGCTAAAAACACTGTCCATGGGGACATCAAAGGAGCAAATATACTGGTGGATCCCAATGGCCATGTGAAATTGGCAGATTTTGGAATGGCAAAGCATGTAAGAGTATTCACATGCATTTTTTCTTAA 735 44.08 MTSPGPSSRIQSGAVTPLHPRAGAAAAESPTNRPDDGKQQSHRLPLPLITISNSCPFSPTYSTSTTPSVPQSPGRAENPISPGLRWKKGWLLGRGAFGHVYLGFNSESGEMCAMKEVTLFSDDAKSKESAQQLGQEISLLSRLSHPNVVQYYGSETVDDKLYIYSEYVYGGSIYKLLQEYGQFGEIAIHSYTQQILSGLAYLHAKNTVHGDIKGANILVDPNGHVKLADFGMAKHVRVFTCIFS* 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3382879 3384672 + Vvi2g352 Vvi2g352 783051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g352 244 ProSiteProfiles Protein kinase domain profile. 86 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g352 244 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 244 - -
Vvi2g352 244 MobiDBLite consensus disorder prediction 59 80 - -
Vvi2g352 244 MobiDBLite consensus disorder prediction 59 75 - -
Vvi2g352 244 SMART serkin_6 86 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g352 244 Pfam Protein kinase domain 90 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g352 244 MobiDBLite consensus disorder prediction 1 41 - -
Vvi2g352 244 SUPERFAMILY Protein kinase-like (PK-like) 85 237 IPR011009 -
Vvi2g352 244 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Vvi2g352 244 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 244 - -
Vvi2g352 244 Gene3D Transferase(Phosphotransferase) domain 1 85 240 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76540 PF00069 Pkinase 5.30E-41 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g352 K20717 - vvi:104881672 479.944