Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g359 ATGTACTCGTCTATCCTTCGACGACATTCCAGCTCCTCCTCGAAGCTTCTCTGCACCTTCTTCTTCGCCCGCCCAATGGGCGGCGGTCCAAGAACCTTTCCCGGCGGTATCAACAAATGGCAATGGAAACGTCTCCACGAGAAGAAAGCCAGGGAGAAGGAGAAGAGACTTCTCGACCACGAGAAACAGCTCTACGAAGCCCGAATCCGATCGCAAATCCGGGCCAAACTCGCTGGGAAACCCGTTTCCGAATTCTCTCCGGATTCGGATCATCCGAATCACAACCCCATGTCCCCCCAAGACCACATCAAAGCCCTCGCTGATCGGTTCATGAAGGAAGGCGCCGAAGACCTCTGGAACGACGACGACGGCCCCGTCAAATCTCCTCCACTACTGCCGCGGCGGCCATCCAATGGATTGAGTCGGCAGATTGAGCCTCCGGTTGATCTTCGGAAGTTGACATCCCATGGGCGGAGTTTGGGGCCCGGAAATGCGAGAATTGTGAGCAGGGCTTTGAAACCTAGGCATTATTCTGTGCAAGTGCGGAGGAGGTTTCGGAGAAACGAGAGTTCGTCGAGCGATGATGGTTCGGATGTGAGTTCTGGGGATGAATTTTCGGGGAGATTGGTGGATGATGATGTGGAATTGAGGGGAAGGAGAAATGTACAAAAGATGATGAGTAGTGCTGCTTTGGGGAAGTACGATGTCAAGATCAAGAGGCGGGTGATGCCGAAGTCTATTGATGAAGGGGATGATTTTTCGGAGCAAATTGAGTTGATTAGACATGAGTTGAGTAGGAAGAATTTGGCGGAGGAAGAGGAAAAAGGGGATGAAGAGTCCATTCTTAGTCAGAAAAGATTTGATGAATGTGGTGTATCTCCATTGACAGTCAAGGCACTTTCTTCAGCAGGCTATGTACAAATGACAAGGGTACAAGAGGCTACTCTTGATGTTTGCCTTGAAGGAAAGGATGCTTTAGTCAAAGCTAAAACCGGCACTGGCAAAAGTGCTGCTTTCTTGCTTCCTGCAATTGAAGCAGTTTTGAAGGCTACAAGTAGCAACAGAATTCAACGGGTGCCACCAATACTTGTTCTTATTCTCTGCCCAACAAGAGAAATTGCAAGTCAGATCGCTGCGGAAGCAAATGTTATGCTAAAGTACCATGATGGCATAGGTGTTCAAACATTAATTGGGGGTACACGTTTCAAGTTTGATCAGAAACGCCTAGAGTCAGATCCATGCCAGATTATAGTGGCTACCCCTGGTAGGTTGTTGGATCATATTGAGAATAAGGGTAGCTTCTCTGTTCGTCTGATGGGATTGAAAATGCTTGTTCTTGATGAAGCTGACCACTTACTGGACCTGGGATTCAGAAAAGACATGGAGAAAATTGTAGATTGTTTACCCCGCCAGAGGCAGTCGTTGCTGTTCTCTGCTACAGTCCCTAAAGAGGTTCGCCGAATATCTCAACTTGTTTTGAAAAAGGAACATGCTTTTGTTGATACAGTGGGTCTGGGTAATGCAGAAACTCATGCAAAAGTTAGGCAGTCTTACCTTGTTGCACCACATAAACTGCATTTTCAAATTGTGTACCACCTTTTGAAGGATCATATATTGCAAGTGCCAGATTACAAGGTCATTGTTTTCTGTACAACTGCAATGGTAACATCACTTGTGTTTCTACTTCTTCAAGAGATGAAAGTGAATGTCAGGGAGATACATTCTAGAAAGCCTCAGATATATCGAACTCGCATCTCTGAGGAATTCAGGGAATCAAAACGTTTGGTTCTTATCACATCCGATGTTTCAGCTCGTGGTATTAATTATCCTGATGTTACTTTGGTCATTCAGATGGGTATTCCTTCTGATCGAGAACAATATATACACCGTCTTGGAAGAACTGGACGAGAAGGCAAAGAAGGGGAAGGCATCTTGTTGGTTGCACCATGGGAAGAATATTTCCTGGATGAAATAAAAGACCTGCCTATTGAGAAATTTCCTTTACCATTATTGGATCCAGACTTAAAGCTCAAGGTGGGTGCTTCGATGGACAAGATTGATACTAGTGTCAAAGAAGCAGCATATCATGCTTGGCTTGGCTATTATAACTCGATCAGAGAAACAGGCAGAGATAAAACTACACTTGTTGAGCTAGCCAACCAATTTTGTGAGTCAATTGGTTTACAAAAACCTCCTCTACTCTTCCGGAAGACAGCCCTGAAAATGGGTTTGAAAGGTATACCTGGCATCAGAATCCGAAGGTAG 2265 45.56 MYSSILRRHSSSSSKLLCTFFFARPMGGGPRTFPGGINKWQWKRLHEKKAREKEKRLLDHEKQLYEARIRSQIRAKLAGKPVSEFSPDSDHPNHNPMSPQDHIKALADRFMKEGAEDLWNDDDGPVKSPPLLPRRPSNGLSRQIEPPVDLRKLTSHGRSLGPGNARIVSRALKPRHYSVQVRRRFRRNESSSSDDGSDVSSGDEFSGRLVDDDVELRGRRNVQKMMSSAALGKYDVKIKRRVMPKSIDEGDDFSEQIELIRHELSRKNLAEEEEKGDEESILSQKRFDECGVSPLTVKALSSAGYVQMTRVQEATLDVCLEGKDALVKAKTGTGKSAAFLLPAIEAVLKATSSNRIQRVPPILVLILCPTREIASQIAAEANVMLKYHDGIGVQTLIGGTRFKFDQKRLESDPCQIIVATPGRLLDHIENKGSFSVRLMGLKMLVLDEADHLLDLGFRKDMEKIVDCLPRQRQSLLFSATVPKEVRRISQLVLKKEHAFVDTVGLGNAETHAKVRQSYLVAPHKLHFQIVYHLLKDHILQVPDYKVIVFCTTAMVTSLVFLLLQEMKVNVREIHSRKPQIYRTRISEEFRESKRLVLITSDVSARGINYPDVTLVIQMGIPSDREQYIHRLGRTGREGKEGEGILLVAPWEEYFLDEIKDLPIEKFPLPLLDPDLKLKVGASMDKIDTSVKEAAYHAWLGYYNSIRETGRDKTTLVELANQFCESIGLQKPPLLFRKTALKMGLKGIPGIRIRR* 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3470704 3475501 - Vvi2g359 Vvi2g359 783058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g359 754 Gene3D - 262 501 IPR027417 -
Vvi2g359 754 Pfam DEAD/DEAH box helicase 309 487 IPR011545 GO:0003676|GO:0005524
Vvi2g359 754 SMART helicmild6 557 638 IPR001650 -
Vvi2g359 754 MobiDBLite consensus disorder prediction 116 167 - -
Vvi2g359 754 Pfam Helicase conserved C-terminal domain 529 637 IPR001650 -
Vvi2g359 754 SMART ultradead3 304 517 IPR014001 -
Vvi2g359 754 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 316 499 IPR014001 -
Vvi2g359 754 Gene3D - 508 732 IPR027417 -
Vvi2g359 754 CDD SF2_C_DEAD 514 647 - -
Vvi2g359 754 Coils Coil 43 63 - -
Vvi2g359 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 655 IPR027417 -
Vvi2g359 754 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 285 313 IPR014014 GO:0003724
Vvi2g359 754 PANTHER RNA HELICASE 257 753 - -
Vvi2g359 754 PANTHER RNA HELICASE 29 130 - -
Vvi2g359 754 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 257 753 - -
Vvi2g359 754 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 29 130 - -
Vvi2g359 754 MobiDBLite consensus disorder prediction 179 206 - -
Vvi2g359 754 MobiDBLite consensus disorder prediction 80 100 - -
Vvi2g359 754 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 533 683 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g359 - - - vvi:100254793 1423.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g359 . . . . . . Bma07g01642 . . . Cma02g01094 . . Car15g01094 . . Cpe05g00622 . . . . . . . . . . . . . . . . . . . . . . . Blo19g00316 . Bda09g00047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007400 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 3 3 1 36