Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g361 ATGGACGGTCTCGCGCTTACTACCTCCTTCTCCATCAATCGCTCCCATGTCGCCACTTTCTCTTCCCGAAGAATCTTCTTCTCTCGTAACCCTAAGCTTCGGGTTTTTGCCTCCAAAGACGATCCTAAGCTCGATAAATGGGACCAAATGGAGCTCAAGTTCGGTCGTTTGCTCGGTGAAGACCCCAAGCTAACCCTAGCCAAGATAATGGGTAGGAAATCAAATCCTGATGTCACTCCTCTCGAAATTGAGAAAAAATTTCACAAGAAACAAGGTAAATTAGCTGATGCAGAAGTACCGGACATTGTATTTGATGGGTCTGAACAAGGGGGGTCGCCCAATTCTTTGAGTGGATTGAATTTGGTGCGGCCTGTTCCAAAGAAAGGAATCAAGTTTGAGGGGGATGATAAATTGAATGAGATGAAGAAGCAGAGTCAGCCAGCTGGGAAGGCAGTACAGAATACTAAGAATACTGTTCCTAATGTTATATTGCGAAAACCGACTGTGTTTAATGAAGATGATGTTGATAGCAAGCCTTCCAGGTTGAGGATGAAACCAAATTTGTCTCTGAAAATGAAGAAAGAAGCGAAGTTCAGTGACATGACATTATTAAGAAAGCCTGAGAAATTAACAAAGATTAGCATTGGCATTGAGGAGGGTAGTTCATCAGGTTCATCTGAATATACTGGAGCTGCTAATTCCATGAATAATGATATTGAGGAATCTCTAGAAACTAGGGATGACTCATTCTCAATGGGACCTGAGCTAGTAGATAACTCCATAATTGGATTACAGCCACTTGAGCATAGTGATATCATTGATATGGGACCTGCTAAAGTGGAAACTGCTGCAAGTGAACCATCAAATCGAAAATCAGTTGACCCGAAAGGCAAGTTGTCTATGGAAGCTGCGCTGCAAGGAAAACCAAAGAGGTTAGAACAATCTGTAAAAGAAATGTCAAATCTGAGTCAACCGGAAACAGTGCTAGCGAATCCTGAGAGTTATGGCAATTCTGTTGAGCTTGAGAATTTCCTTGCAACATCATCTTTGAAGGGACATGAAGATACAGACTGGTCAAGGGCAGAAGATCTGGTTAAGACCGGAGGAAGGGAAGAAGTAGAGTTGATAAGCTCTAGCACCAGAGGCTTTGTTGTATCTTTTGGCTCTTTGATAGGATTTTTGCCATATCGTAATCTTGCTGCTAAGTGGAAGTTCTTGGCCTTTGAGTCATGGTTGAGAAGGAAAGGTTTAGACCCATCAATGTACAGGCAAAATCTAGGTATTGTGGGAAGTCATGAAGTTGCGAACAATCCCTCTCCTGATGCAAACCCAGGTCCAGAAATACATAAACAGCTCGAGGGAGAAATTTCACCGAATATGAACTTGGAGGATCTTCTTAGGATTTATGACCAAGAGAAAATCAAATTCCTGTCATCGTTTGTTGGTCAGAAAATCAATGTGAATGTGGTAATGGCTGATAGAAAAACTAGAAGACTAATATTTTCCGGGAGGCCAAAGGAAAAGGAAGAAATGGTTGAGAAAAAGAGAAGTCTCATGGCAAAACTTAGCATTGGGGACATTGTGAAATGTCGCATAAAAAAGATTACTTACTTCGGTATTTTTGTTGAGGTTGAAGGAGTACCTGCACTGGTTCACCAGACTGAAGTGTCATGGGATGCAACTCTGGATCCTGCATCATATTTCAAAATTGGTCAGATTGTTGAGGCAAAAGTCCACCAATTGGATTTTTCTCTTGAACGCATTTTCTTATCATTAAAGGAGATAACGCCAGATCCACTAATCGAGGCTTTGGAGTTTGTAGTTGGTGATAATCCCTTGGATGGGAGATTAGAAGCAGCACAAGCAGATACTGAGTGGCCTGATGTGGAATCACTCATCAAAGAACTGGAACAGATTGAGGGGATCCAGTCTGTATCAAAAGGCCGATTTTTCCTGAGCCCTGGTTTAGCTCCCACATTTCAGGTTTACATGGCATCCATGTTTGAGAATCAATACAAGTTACTTGCACGATCTGGAAACAAAGTACAAGAGGTGATAGTTGAAGCATCCTTGGGTAAAGAAGACATGAAATCTGCAATTCTAACCTGTACCAATAGAGTGTAA 2124 41.71 MDGLALTTSFSINRSHVATFSSRRIFFSRNPKLRVFASKDDPKLDKWDQMELKFGRLLGEDPKLTLAKIMGRKSNPDVTPLEIEKKFHKKQGKLADAEVPDIVFDGSEQGGSPNSLSGLNLVRPVPKKGIKFEGDDKLNEMKKQSQPAGKAVQNTKNTVPNVILRKPTVFNEDDVDSKPSRLRMKPNLSLKMKKEAKFSDMTLLRKPEKLTKISIGIEEGSSSGSSEYTGAANSMNNDIEESLETRDDSFSMGPELVDNSIIGLQPLEHSDIIDMGPAKVETAASEPSNRKSVDPKGKLSMEAALQGKPKRLEQSVKEMSNLSQPETVLANPESYGNSVELENFLATSSLKGHEDTDWSRAEDLVKTGGREEVELISSSTRGFVVSFGSLIGFLPYRNLAAKWKFLAFESWLRRKGLDPSMYRQNLGIVGSHEVANNPSPDANPGPEIHKQLEGEISPNMNLEDLLRIYDQEKIKFLSSFVGQKINVNVVMADRKTRRLIFSGRPKEKEEMVEKKRSLMAKLSIGDIVKCRIKKITYFGIFVEVEGVPALVHQTEVSWDATLDPASYFKIGQIVEAKVHQLDFSLERIFLSLKEITPDPLIEALEFVVGDNPLDGRLEAAQADTEWPDVESLIKELEQIEGIQSVSKGRFFLSPGLAPTFQVYMASMFENQYKLLARSGNKVQEVIVEASLGKEDMKSAILTCTNRV* 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3488172 3496025 - Vvi2g361 Vvi2g361 783060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g361 707 Pfam S1 RNA binding domain 523 593 IPR003029 GO:0003676
Vvi2g361 707 SUPERFAMILY Nucleic acid-binding proteins 508 598 IPR012340 -
Vvi2g361 707 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 15 707 - -
Vvi2g361 707 SMART S1_6 366 504 IPR022967 -
Vvi2g361 707 SMART S1_6 523 593 IPR022967 -
Vvi2g361 707 Gene3D - 505 596 IPR012340 -
Vvi2g361 707 ProSiteProfiles S1 domain profile. 525 593 IPR003029 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g361 - - - vvi:100265091 1296.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g361 . . . . . . . . . . . . Car02g01235 . . . Cpe05g00315 . . . . . . . . . . . . . . . Cone12ag0318 . . . Csa05g00302 Chy09g01202 . . . . . . . . . . Cmo02g01509 . . . . . . . Bhi12g00221 . . Lac11g2118 Hepe06g1567 . Lcy12g1675 . . . . . . . Lsi09g00285 . . Cme09g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010174 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32