Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g362 ATGTCTTTCAGTGGGACAACACAGAAATGCAAGGCCTGTGATAAGACTGTCCATATCATTGATACAATATCAGCTGATGGAATTGCTTATCATAAGACCTGCTTCAGATGCAGTCACTGCAATGGACCTCTTGTGATGAGCAACTACTCTTCCATGGATGGAGTCTTGTACTGCAAGCCTCATTTTGAGCAACTCTTCAGGGAATCTGGCAGTTTGAGTAAGAAGTTCCAATCATCTGGCAAGGCAGATCTGTCTAGGACTCCCAGCAAACTCTCCTCCATGTTCTCGGGGACCCAAGACAAATGCTCCTTGTGTAAGAAAACCGTATACCCACTTGAGAAGGTGACGGTGGAGGGAGAATTTTACCATAAATCATGCTTCAGGTGTTCTCATGGGGGTTGCTTCCTCACACCCTCATCCTATGCCGCTCTAGATGGAATCCTCTACTGCAAGCCTCACTTTACTCAGTTGTTCAGGGAGAGAGGCAGCTACAGCACTCTCAACAAGACTGCTTCAATGAAGAAAAGTACTGCTGCAGCGCCATTGCCGGACCAAAACTCTGGACAAGAACAGCTGGCCACCACGCCGGAGGAAGATCCAACACCAGGATCAGAACCAGAGCCTGGCCACACCCAAGAACAATCATAA 648 47.84 MSFSGTTQKCKACDKTVHIIDTISADGIAYHKTCFRCSHCNGPLVMSNYSSMDGVLYCKPHFEQLFRESGSLSKKFQSSGKADLSRTPSKLSSMFSGTQDKCSLCKKTVYPLEKVTVEGEFYHKSCFRCSHGGCFLTPSSYAALDGILYCKPHFTQLFRERGSYSTLNKTASMKKSTAAAPLPDQNSGQEQLATTPEEDPTPGSEPEPGHTQEQS* 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3496353 3498474 - Vvi2g362 Vvi2g362 783061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g362 215 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 201 - -
Vvi2g362 215 Pfam LIM domain 102 157 IPR001781 -
Vvi2g362 215 Pfam LIM domain 10 65 IPR001781 -
Vvi2g362 215 MobiDBLite consensus disorder prediction 172 215 - -
Vvi2g362 215 MobiDBLite consensus disorder prediction 172 198 - -
Vvi2g362 215 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 128 166 - -
Vvi2g362 215 SMART lim_4 9 61 IPR001781 -
Vvi2g362 215 SMART lim_4 101 153 IPR001781 -
Vvi2g362 215 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vvi2g362 215 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vvi2g362 215 PANTHER OS06G0237300 PROTEIN 1 201 IPR045268 GO:0051015
Vvi2g362 215 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vvi2g362 215 ProSiteProfiles LIM domain profile. 100 160 IPR001781 -
Vvi2g362 215 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vvi2g362 215 CDD LIM2_SF3 102 162 - -
Vvi2g362 215 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 94 127 - -
Vvi2g362 215 CDD LIM1_SF3 6 68 - -
Vvi2g362 215 Gene3D Cysteine Rich Protein 96 166 - -
Vvi2g362 215 Gene3D Cysteine Rich Protein 4 74 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g362 - - K24413 vvi:100242820 445.277
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g362 Vvi15g927 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g362 . . . . . . . . Cmo06g01119 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0769 . . . . . . . . . . . . . . . . Cma06g01093 . Car06g00928 . Cpe08g00525 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001747 2 5 1 2 2 1 4 2 2 2 2 2 3 2 2 4 1 3 3 1 2 2 2 2 2 1 2 6 2 2 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14584 PF00412 LIM 2.10E-11 CL0167 Vvi TF