Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g365 ATGGCGGAGCAAGAAGCTGAGCACAATGAACTCAGCTTGGAAACAAGAGTTTCTAACTCACTGAGATACTACTCTGCCATATTTGATTCAATTGATTATAGTCTTCCATTGGATAGCCCAGTGAGGATGAAAGTAGAGGAGATGTTTGCTCGGGAAATTAGGAATATAATTGCATGTGAAGGAAGTGACAGGGTAGAAAGGCATGAAAGTTTCGAAAAGTGGAGGAGGCGGATGGAGCAAGGAGGGTTTCGATGCGTGGGGATCAGCGAAAGGGAAATGCTTCAGAGCCAAATGCTGTTGAAGATGTACTCCTGTGAGAATTATAGTGTTTCAAAGCGAGGCCAAGATGCGGCGCTTACTCTAAGTTGGCTAGATCAGCCTCTTTACACGGTCTCAGCATGGACTCAGGTGGATGTTGCAGGCAGCTCTTCCTCTTTTTCTCTGCCAAGTTGA 453 45.7 MAEQEAEHNELSLETRVSNSLRYYSAIFDSIDYSLPLDSPVRMKVEEMFAREIRNIIACEGSDRVERHESFEKWRRRMEQGGFRCVGISEREMLQSQMLLKMYSCENYSVSKRGQDAALTLSWLDQPLYTVSAWTQVDVAGSSSSFSLPS* 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3512887 3513635 + Vvi2g365 Vvi2g365 783064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g365 150 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 140 IPR005202 -
Vvi2g365 150 PANTHER SCARECROW-LIKE PROTEIN 28 1 140 IPR030027 -
Vvi2g365 150 ProSiteProfiles GRAS family profile. 1 135 IPR005202 -
Vvi2g365 150 Pfam GRAS domain family 1 135 IPR005202 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14586 PF03514 GRAS 2.40E-45 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g365 - - vvi:100247949 285.034