Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g367 ATGGTTGAGAATTCGCCGGACTGGATTCCAGAGGGATGGACGGTACAAGTCAAACTGGCAAAGAATGGCCGGAACGTTAAGCTTGGAATTAAAACAAAAAAATTCCCTGACTGGTTACCTAATGGCTGGATCCTCGAGTTGAAAACTCAACGGAGTGGTTCATGTGTTGGTAAACAATACAAGTGTTATCTTGATCCATCAACTGGATACAGATTCTATTCCAAGCCAGATGTGTTCCGATATCTCAAAACCATAAAGCACAATAGTTGCACATCAAGACAGAAGAAAGTTGGACCTGGCATGCCTTCTTTAGGCAAGGTTGTAATTGAAAGGTCTACAGCGGATGGGTTACCAGCAGGGTGGATAAAGGAAATCAAAATTAGAATGAATGAAAATGGAATCCGAAGAGACCCGTATTATACGGATCCTGTGAGTGGGTATGTTTTCCGATCCAGAAAAGATGTCTTTCGCTATCTAAAAACTGGAGAGATTAGTAGGCATGCATTCAAACCAAAGAATAAGTGCATCAATGTTCCGGAATTGCCAAATGATGAGATCTCTCCACCACCTGGAGCTAAAAGGCAGAAATTAATGCACCAGAAAACCAGGCGACGCCTTTTCTCAGCAACTGCTTCTGCAGATACAGGAAGTTCTGAAATGAGCAACTTATCCTTGCCAGAAAATCAGGGCTCAAGGCAAACCAAGCAGCTATTTTCTAAACCTAAGTTTGCTTTGGAGCCCCCAACTGAAACTCTCCAAGAGAAGCTTCTGGTGGAGAATGAAAAATATGCCGAATCTAAGAAAAGCTCTGGTAGGAGGAATTCAGATCTGCAAAAGGACAAAGGTTCCAAGAGAAAATCAAAAAACAAAGACTGTAACTTGCCTTGCCGTTCATCAAAACGGCTTGCTGGGCTCAAACCCGACCTGGTAGGCAACTCAGGATCCAGCGAACAGGCTCTTGCAGTTGCAGATAAGATCTCTGGTAAAAGTGAAGTAATTCCAGCTCTAGGTGTGGTAATGGGCAGTTTGGACAATACGGCATGCTGTCAACTTGAGGTTGTCCTAGAAGCAGAGCCTGGACATCATGCTTCCAGAGCCATAGAAGCTCCATCAGATGTAGAGCAATCAAAGAAAGACAATAGGCATCTTGAAGATGAAGCTGTTCAAGAAGAGGAAGCTGGGAAACTGGAGACAGGGAAAAAGACTGGTGATGAGCCGGAGCTGCCACCAATGGACTTCCCTTTTATGGATGTCTGGTCAGATCCATGCCTAGAATTTGCGTTCAAAACTCTCACGGGTGCTATACCCATAGAAGATAATCTGGAAATTGAGGGTTACTTTCAGCAACAAATTGACTCTTCTCACACCCAGAACAGTAGCCTGACACTGCCAGATTTTGGTTTACCAAGTTCCCAGTTTGATGCACAAGAAAAATCTGTACCCAGACAGCACTTTGCTTCAAAACCATCAGTTTTGCCCAAGGAAATGTTGGTTAAACCGAAGAATTGGTTTTTTTTTTTAATGTTTTATTCACCTTGTCTGCCACTTAACTCTATCGGCCAAAAAGGTGGGTATCGTAGCATGACCCCAAGCAATATCCTGGTCAACTTATGTCAGTTTTCATCACTGGAGAGGAGATTCAGAGAATTAGGGATAACTTTGTTACTTTCCCTCCTCATCCCAATCGAATTCATGGTAGCCATGTTAGCAGAAGGAACCAGCTTCTTCGATGTCTTCTTGCCTTTCCTCCTCCTCCTCCCACTTCTGGTCTTTCTCATCCTAAAGCTTTTAAAAGATTCATCTTCGCTCAAATCTCCACCACTCCCACCAGGACCTTCTCCATGGCCAATCTTAGGCAATCTTTTGCATCTGGGAAACATGCCTCACATCAGTTTAGCTCGCTTTAGCCAGTCCTATGGTCCTCTCATCTCGCTAAGACTCGGATCCCAAATCTTGGTGGTGGCATCAACATCCTCCGCCGCCATGGAAATTCTCAAGACACATGATCGTGTTCTATCTGGTAGATATGTTCCTCACGCAGTACCAGCCAAGAATTCTGAAATCAACCCCATGTCTCTTGGATGGGCAGTTGAGTGCAATGGTGCATGGAAGAATCTAAGGACAGTTTGTAGGGCTGAACTTTTCTCAACCAAAGTAATGGAGTCTCAAGCATGGGTGGGAGAGAAGAAGGTGATGGAGATGGTGAGATTTGTGAGCACAAAGGAGGGGGAGGTGATGAAAGTTGGAGAAGTGGTGTTTGCTACTGTACTTAATACCCTGACTACTGTTCTTATGTCCAGAGATTTTATCAGCTTTGAGGATGATAATAAGGATGGAGGCATGAAAGGACTTGTAAGGAAAATGGTGATGGCCATGGCTGCTCCGAATTTGGATGATTTTTATTTAATTTTCAGTGGATTGGATCTTCAAGGTCTGAACAAGAAGACCAAGGAGCTGATTGCAAGGATTTGTTCTATGTGGGAGTCTGTCATCAGAGAGAGAAGAGAAGGTGCAAGCGATGACCCAAGCAAGCAGGACTTCTTGAATATTCTGATCCGCAGCGGCTACTCGGATGATCAAATCAATCAATTGTTCATGGAGTTGCTTACTGCAGGGGCAGACACCAGTAGTTCAACATTGGAGTGGGCAATGGCAGAACTGATAAAAAGTCCAGAATCCATGAAGAAAGTCCATGAAGAACTTGCAAGAGAAATCAGTGATAATCTGCCAAAAGCATCTGATCTACCTCACCTACCATACCTCCAAGCCTGTGTCAAAGAAACCCTGAGGCTGCACCCCTCGGCACCATTGCTCCTTCCTCGCCGTGCATCAGTCTCATGTGAAGTTATGAATTATACCATTCCAAAGGACTCTCAAATATGGGTAAATGCCTGGGCAATTGGGAGAGACCCCATGAATTGGGAAGACCCTCTAGTGTTTAAACCAGAGCGCTTCCTCAACTCAGCTGTAGACTTCAAAGGGAATAATCTAGAATTCATACCCTTTGGTGCTGGAAGGAGAATATGCCCTGGTCTGCCCATGGCTGCAAGGCTTCTTCCTTTGATTCTTGCCTCCTTGACCCATTTCTTTGATTGGTCTCTTCCAAATGGAACCACTCCAGATGAGCTAGACATGAACGATAAGTTCGGTGTAACATTGCAGAAGGAACAACCTCTACTCATCATTCCTAAAAAAAGAAAAAAAAAAACAATTACCCATCAGAAAAATTGA 3231 44.04 MVENSPDWIPEGWTVQVKLAKNGRNVKLGIKTKKFPDWLPNGWILELKTQRSGSCVGKQYKCYLDPSTGYRFYSKPDVFRYLKTIKHNSCTSRQKKVGPGMPSLGKVVIERSTADGLPAGWIKEIKIRMNENGIRRDPYYTDPVSGYVFRSRKDVFRYLKTGEISRHAFKPKNKCINVPELPNDEISPPPGAKRQKLMHQKTRRRLFSATASADTGSSEMSNLSLPENQGSRQTKQLFSKPKFALEPPTETLQEKLLVENEKYAESKKSSGRRNSDLQKDKGSKRKSKNKDCNLPCRSSKRLAGLKPDLVGNSGSSEQALAVADKISGKSEVIPALGVVMGSLDNTACCQLEVVLEAEPGHHASRAIEAPSDVEQSKKDNRHLEDEAVQEEEAGKLETGKKTGDEPELPPMDFPFMDVWSDPCLEFAFKTLTGAIPIEDNLEIEGYFQQQIDSSHTQNSSLTLPDFGLPSSQFDAQEKSVPRQHFASKPSVLPKEMLVKPKNWFFFLMFYSPCLPLNSIGQKGGYRSMTPSNILVNLCQFSSLERRFRELGITLLLSLLIPIEFMVAMLAEGTSFFDVFLPFLLLLPLLVFLILKLLKDSSSLKSPPLPPGPSPWPILGNLLHLGNMPHISLARFSQSYGPLISLRLGSQILVVASTSSAAMEILKTHDRVLSGRYVPHAVPAKNSEINPMSLGWAVECNGAWKNLRTVCRAELFSTKVMESQAWVGEKKVMEMVRFVSTKEGEVMKVGEVVFATVLNTLTTVLMSRDFISFEDDNKDGGMKGLVRKMVMAMAAPNLDDFYLIFSGLDLQGLNKKTKELIARICSMWESVIRERREGASDDPSKQDFLNILIRSGYSDDQINQLFMELLTAGADTSSSTLEWAMAELIKSPESMKKVHEELAREISDNLPKASDLPHLPYLQACVKETLRLHPSAPLLLPRRASVSCEVMNYTIPKDSQIWVNAWAIGRDPMNWEDPLVFKPERFLNSAVDFKGNNLEFIPFGAGRRICPGLPMAARLLPLILASLTHFFDWSLPNGTTPDELDMNDKFGVTLQKEQPLLIIPKKRKKKTITHQKN* 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3522058 3538402 - Vvi2g367 Vvi2g367 783066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g367 1076 MobiDBLite consensus disorder prediction 363 407 - -
Vvi2g367 1076 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 1002 1011 IPR017972 GO:0005506|GO:0016705
Vvi2g367 1076 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 576 1067 - -
Vvi2g367 1076 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 29 102 IPR001739 GO:0003677
Vvi2g367 1076 PRINTS E-class P450 group I signature 636 655 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g367 1076 PRINTS E-class P450 group I signature 860 877 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g367 1076 PRINTS E-class P450 group I signature 880 906 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g367 1076 PRINTS E-class P450 group I signature 922 940 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g367 1076 PRINTS E-class P450 group I signature 963 987 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g367 1076 PRINTS E-class P450 group I signature 999 1009 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g367 1076 PRINTS E-class P450 group I signature 1009 1032 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g367 1076 MobiDBLite consensus disorder prediction 205 238 - -
Vvi2g367 1076 PANTHER 3'-HYDROXYLASE ISOZYME, PUTATIVE-RELATED 576 1067 - -
Vvi2g367 1076 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677
Vvi2g367 1076 SUPERFAMILY Cytochrome P450 609 1066 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g367 1076 MobiDBLite consensus disorder prediction 262 295 - -
Vvi2g367 1076 Gene3D Cytochrome P450 599 1073 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g367 1076 Pfam Methyl-CpG binding domain 38 85 IPR001739 GO:0003677
Vvi2g367 1076 Coils Coil 373 393 - -
Vvi2g367 1076 Gene3D - 29 103 - -
Vvi2g367 1076 Gene3D - 106 206 - -
Vvi2g367 1076 MobiDBLite consensus disorder prediction 262 299 - -
Vvi2g367 1076 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 107 174 IPR001739 GO:0003677
Vvi2g367 1076 SUPERFAMILY DNA-binding domain 36 88 IPR016177 GO:0003677
Vvi2g367 1076 PRINTS P450 superfamily signature 871 888 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g367 1076 PRINTS P450 superfamily signature 923 934 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g367 1076 PRINTS P450 superfamily signature 1000 1009 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g367 1076 MobiDBLite consensus disorder prediction 363 408 - -
Vvi2g367 1076 MobiDBLite consensus disorder prediction 180 245 - -
Vvi2g367 1076 Pfam Cytochrome P450 609 1056 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g367 - - - vvi:100253084 973.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g367 Vvi16g651 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g367 . . . . . . . . . . . Cma15g01410 . Car15g01272 . . Cpe05g00314 . . . . . . . . . . . . . . . Cone12ag0321 . . . . . . . . . . . . . . . . Cmo15g01482 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000969 6 2 3 2 3 2 1 3 3 2 3 2 1 1 1 2 2 11 1 3 2 3 2 3 3 3 0 2 4 4 80