Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g368 ATGAGAAACGTTACTTTCAATACTACCGATATTTTAATCTCCCCTTCCGTACTAAATGACCAAAATATCCTTTCAAGGATGACCCCTCCCACAAGCATGTATCTAAAAAAAGCCTACTTAGACTGCAAGTCAGGTGTAGAACAATTGAGAAGACCCCCAGGCCCCAAGAAACAGACTCACTTCAACAAAAGCCCTTTCTTTCACATTACAATTGCCCCCATAATTCTTCCTATATATAACCCCAGAAATCCCCCAACGCCCACATTCCACCCAACCATCTATTCCTCTGCAAACCCCCCGCCAAAACCACTGAATAATTCACACCAAATCCCTCTTGTTCCCATGGCCACCCCCAATCAGGAGGCTATCGATACCTTTATCAGCATCACCGGCGCCTCCGAGGCCGTCGCCCTCCGCAAGCTCGAGGAGCATGGTGGTGATCTTAATGAAGCTGTGAATGCACATTTCAGCGAAGGAGATAGAAATATTGCGCGTGAAACTTCAATTGCTGCTCCTCAAAGTGATTTCATGGATATAGATGATCCAATCCCAGTTGAATCCCAGGGGCCTGCTTCATCACTTTTATCTGCTGCTACAAATTTGAACCCTTTGTCACTCCTCGATCCACTCCTCGATCCAAGTTCCAATAGAAGTTTGTTCGATAGTGATTCTGACTTGACTAGACGGGGACCATCTGTTTCACATCCAAGGGAGGTGAGGGAGATCCCTATAGAATTCAAGGATGGGAATGAGACATCTCACCAGTCTGGCTCTACTCCTACAATAGAAGATGTCACTGATACTGCCCCTGCACATGAACCAGAAATCCGTGGGGCTGTCATGACTGTGGATGAAGATGATGATGATATTCCAACTGCTCCAAGTGCACAAGGTGCAGGGCAAAATGCCCAAAGAGATGATACTTTGGGTGATAGTTCTCATGATGGACGTTCTAGACCAATTGTTCCTGGTTTTAATAATTTGCCTGACTATGCAAATGATATAGAAGAAGAAATGGTTCGAGCTGCCATTGAGGCTTCAAAACGGGAGGTTGAAGAAGGTTACTCAAATCAGCAATTTGGTGCTCATAATGAGTTAAGTAATCCTGGGCCTCAACAAAGGCCATCTCACCTAGAAGATGCTGCACTTGCACGTGCTGTTTCATTGTCCTTGAAGACTGCTGAACAAGAGAAAGCACTGCGTGAGCAAGGGGGAGAAGTAGGAGCATCAGAACTGGGAGCTGACAGTCCAGCTGAGGTGGAAGAGCTGAGGGAATTACCTGCACCAAATGGAAGGCAAGGATTTGGTTCTTTGGACAAAGTTACTTCAAGTCGACCTAAGTTGGAGGCAGGAAGCTCATCCATCCAAGATGAAGCTGAAGATATTGATGAACAGCCACTGGTTAGGAACAGGACTAGACGTATGTCTTCTGGCTCAGTTGAATCTGTCAAAGAAACTGAAGCAATTGAGGTCAGCCCAGTGTCCAGTCCCAGGCGGCAGAATGTTGGTGCTGATCCTGACCCCAATGGAACTGCATTCCATTCTGATGAGTGGGGAGGCATCTCTTCCGAGGAACATGATGAGGCAGTCATGCTTGAGGCTGCGCTCTTTGGTGGAATTCCTGATCATTTTGGATTTGGTCCCCATCGATTTATGCATCCTGGTTTAGATAGAAATTTTCCACCTATAGCTCGCCCCCCATCACCTAGTTTGGCTGCTCAGCGCTTGATACGGGAACAACAGGATGATGCATATCTTGCATCACTGCAAGCTGACCAAGAAAAGGAATTAAAGGCTAAGGAGGAAGCTGAAGCTCGTCGTTTACAAGAGCAAATGGCTAGAGAAACTGCTCTTGAGGAGGAAAGGCGAAGGGAAGAAGAATCTCGTAGGAAGTTGGAGGAGCAACAGGAGTTTGAGAGACAATTAGCTGCAAAAGAAGCTTCCCTGCCACAAGAACCAGGATCCGATGATGAGAATGCTGTAACTCTTCTTGTGCGGATGCCTGATGGCAGTCGACGAGGCCGTCGATTTCTTAAATCTGATAAGCTACAGTCTCTGTTTAACTTCATAGATGTTGGTAGAGCAGTCAAGCCTGGCACTTACAGATTGGTGAGACCATACCCTCGACGCGCTTTCAGTGATGGAGAGAGCACTTTAAGCTTGAATGAACTAGGGCTGACCAGCAAACAAGAAGCATTATTTCTGGAGTTGATTTAA 2217 46.37 MRNVTFNTTDILISPSVLNDQNILSRMTPPTSMYLKKAYLDCKSGVEQLRRPPGPKKQTHFNKSPFFHITIAPIILPIYNPRNPPTPTFHPTIYSSANPPPKPLNNSHQIPLVPMATPNQEAIDTFISITGASEAVALRKLEEHGGDLNEAVNAHFSEGDRNIARETSIAAPQSDFMDIDDPIPVESQGPASSLLSAATNLNPLSLLDPLLDPSSNRSLFDSDSDLTRRGPSVSHPREVREIPIEFKDGNETSHQSGSTPTIEDVTDTAPAHEPEIRGAVMTVDEDDDDIPTAPSAQGAGQNAQRDDTLGDSSHDGRSRPIVPGFNNLPDYANDIEEEMVRAAIEASKREVEEGYSNQQFGAHNELSNPGPQQRPSHLEDAALARAVSLSLKTAEQEKALREQGGEVGASELGADSPAEVEELRELPAPNGRQGFGSLDKVTSSRPKLEAGSSSIQDEAEDIDEQPLVRNRTRRMSSGSVESVKETEAIEVSPVSSPRRQNVGADPDPNGTAFHSDEWGGISSEEHDEAVMLEAALFGGIPDHFGFGPHRFMHPGLDRNFPPIARPPSPSLAAQRLIREQQDDAYLASLQADQEKELKAKEEAEARRLQEQMARETALEEERRREEESRRKLEEQQEFERQLAAKEASLPQEPGSDDENAVTLLVRMPDGSRRGRRFLKSDKLQSLFNFIDVGRAVKPGTYRLVRPYPRRAFSDGESTLSLNELGLTSKQEALFLELI* 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3558064 3566452 - Vvi2g368 Vvi2g368 783067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g368 738 MobiDBLite consensus disorder prediction 249 265 - -
Vvi2g368 738 CDD UBA_Ubx1_like 120 156 - -
Vvi2g368 738 Gene3D - 115 159 - -
Vvi2g368 738 MobiDBLite consensus disorder prediction 436 451 - -
Vvi2g368 738 SMART ubx_3 653 737 IPR001012 GO:0005515
Vvi2g368 738 MobiDBLite consensus disorder prediction 353 374 - -
Vvi2g368 738 Gene3D - 329 404 - -
Vvi2g368 738 SMART uim 378 397 IPR003903 -
Vvi2g368 738 SMART uim 335 354 IPR003903 -
Vvi2g368 738 MobiDBLite consensus disorder prediction 222 248 - -
Vvi2g368 738 Pfam UBA-like domain 120 160 - -
Vvi2g368 738 PANTHER FAS-ASSOCIATED PROTEIN 115 353 - -
Vvi2g368 738 PANTHER FAS-ASSOCIATED PROTEIN 378 738 - -
Vvi2g368 738 MobiDBLite consensus disorder prediction 596 658 - -
Vvi2g368 738 PANTHER OS09G0525600 PROTEIN 115 353 - -
Vvi2g368 738 PANTHER OS09G0525600 PROTEIN 378 738 - -
Vvi2g368 738 Pfam UBX domain 656 736 IPR001012 GO:0005515
Vvi2g368 738 SUPERFAMILY UBA-like 116 158 IPR009060 GO:0005515
Vvi2g368 738 Coils Coil 586 642 - -
Vvi2g368 738 MobiDBLite consensus disorder prediction 395 523 - -
Vvi2g368 738 MobiDBLite consensus disorder prediction 209 271 - -
Vvi2g368 738 MobiDBLite consensus disorder prediction 285 330 - -
Vvi2g368 738 Gene3D - 657 737 - -
Vvi2g368 738 MobiDBLite consensus disorder prediction 596 641 - -
Vvi2g368 738 CDD UBX 662 736 - -
Vvi2g368 738 MobiDBLite consensus disorder prediction 349 381 - -
Vvi2g368 738 ProSiteProfiles UBX domain profile. 656 734 IPR001012 GO:0005515
Vvi2g368 738 SUPERFAMILY Ubiquitin-like 619 734 IPR029071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g368 - - - vvi:100251323 1165.98
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g368 Blo02g01097 Blo03g00196 . . . . . . . . . . . . . . . Bhi11g00393 . . . Hepe06g1233 . . Cla10g00354 Cam10g0366 Cec10g0384 Cco10g0379 Clacu10g0370 Cmu10g1207 Cre10g0622 . . . . . . . . . . . . . . . . . . . Cma06g00707 . . Car16g00956 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44