Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g373 ATGGAACCTAGCAATTCTGTTCCACCGGTTTCTTTTTTATCAGGACTCAATGGATCAAGTTCAAATCTTCCAGATACTACAGGAAGATCTTTTACAACTTCTTTTTCTGCCCAATCTGGTTCAGCTGCTGCTTTTAATCATCTTGGGACCATACAAGGGCTACATAATATTCATGGGAGTTTTAACATTCCCAACATGCCAGGCTCCCTTGCATCAAGAAATTCTACAATAAATGGTGGGCATCCTGGTGGTATTCAACAGCCTACAGGAAGCCTATCTAATGGGCGATTTCCAATAAACCATCTTCCCACTGCTCTTTCTCAGCTATCACATGCTAGCTCCCATGGACATCCAGGGGTCACAAATAGAGGAGGATCAGGGGTATCTCCAATGTTAGGGAACACTGGTCCACGAATTACAAGCTCGATAGGTAACCTGGCTGGCGGGGGCAACATTGGAAGGAGTTTAAGCTCTGGTGGAGGATTGGCTATGCCTGGCCTTGCATCTCACCTAAGTTTAATTAGTAATGGATCTGGGAATATGGGTATACAAGGATCTAACAGATTAATGGGTGGCGTTCTTTCACAAGGTACACCACAGGTGATATCTATGCTTGGAAATTCTTATTCTTCTGTGGGAGGGCTACGATCTCAAAACCAAGTCCAAGCAGGGAATAATCATTTAACTTCCATGGCATTACTAAAGGATTTGAGTGTCCATGAGAATGCTCCTTTTGACATAAATGATTTTCCTCAACTGACCGCTCACCCTAATTCTGCTGGTAGTTCTCAAGGACAGCTGGGTTCTCTGAGGAAGCAAAGTGTTGGAGTTGTCCATCAAAACCAAGAATTCAGCATCCAGAATGAAGATTTTCCTGCATTACCTGGATTTAAAGGTGGAAATACTGACTTTCCTGTGGACTCTCACCGGAAAGAACAACTTCATGATAGTGCTGTGTCTATGATGCAATCTCAGCATTTTCCTATGGGAAGGTCTGGTGGATTTAACTTAGGTGTCCCATATTCATCTCATCTTCAGCAGCAACAACAACATGCTTCATCGGTTGGAAGCGGTGGACCACCTTCCATTGGTCTGAGACCTATGAACTCATCTAATACAATATCTGGTGTAGGACCATATGATCAACTCATTCAGCAGTATCAACAGCTTCAGAGCCAGTCTCAATTTCGCATGGGGCAAATTTCAGCGGTTGGTCCACATGGAGACCAGGACCTGAAGTCACAATCACCAGAACCTGTCATTGATGAGTTTGGTTTGCGTGGTTTGTTAAAGGTCATAAGGATGAATAATCCAGACTTGACCTCCCTTGCTTTGGGAATTGATCTTACAACACTGGGTTTGAATTTGAATGCTTCAGACGATCTTCACAAAAGGTTTGCCTCTCCATGGGCTGAAGAACCTCACAAGGGGGAGCCCCAATACAGTATCCCAGAATGTTATTATGCTAAACAGCCGCCTGTGCTTAATCAAGCCCATTTTGCAAAACTACATCTGGAGACATTATTTTATATCTTTTACAGCATGCCGAGAGAAGAGGCACAGCTATATGCAGCACATGAACTGCATGCTAGAGGATGGTTCTACCACAAGGAGCAGCGGCTGTGGCTGACTAGGAATGCAAGCATGAAGCCCCTTGTCGAGACAAACTCGTATGAGAGAGGATCCTACCTTTGTTTTGATCCCAACACGTGGGAGACAGCTTGCAAGGATAACTTCATCCTTCAGTTTGAAATGATCGAGAAAAAACCTGACCTCCCTCAGCATTAG 1788 44.13 MEPSNSVPPVSFLSGLNGSSSNLPDTTGRSFTTSFSAQSGSAAAFNHLGTIQGLHNIHGSFNIPNMPGSLASRNSTINGGHPGGIQQPTGSLSNGRFPINHLPTALSQLSHASSHGHPGVTNRGGSGVSPMLGNTGPRITSSIGNLAGGGNIGRSLSSGGGLAMPGLASHLSLISNGSGNMGIQGSNRLMGGVLSQGTPQVISMLGNSYSSVGGLRSQNQVQAGNNHLTSMALLKDLSVHENAPFDINDFPQLTAHPNSAGSSQGQLGSLRKQSVGVVHQNQEFSIQNEDFPALPGFKGGNTDFPVDSHRKEQLHDSAVSMMQSQHFPMGRSGGFNLGVPYSSHLQQQQQHASSVGSGGPPSIGLRPMNSSNTISGVGPYDQLIQQYQQLQSQSQFRMGQISAVGPHGDQDLKSQSPEPVIDEFGLRGLLKVIRMNNPDLTSLALGIDLTTLGLNLNASDDLHKRFASPWAEEPHKGEPQYSIPECYYAKQPPVLNQAHFAKLHLETLFYIFYSMPREEAQLYAAHELHARGWFYHKEQRLWLTRNASMKPLVETNSYERGSYLCFDPNTWETACKDNFILQFEMIEKKPDLPQH* 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3615151 3630010 - Vvi2g373 Vvi2g373 783072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g373 595 MobiDBLite consensus disorder prediction 72 120 - -
Vvi2g373 595 PANTHER CCR4 NOT-RELATED 13 128 IPR040168 GO:0030015
Vvi2g373 595 PANTHER CCR4 NOT-RELATED 127 357 IPR040168 GO:0030015
Vvi2g373 595 PANTHER CCR4 NOT-RELATED 358 595 IPR040168 GO:0030015
Vvi2g373 595 Pfam NOT2 / NOT3 / NOT5 family 464 584 IPR007282 GO:0006355
Vvi2g373 595 MobiDBLite consensus disorder prediction 344 377 - -
Vvi2g373 595 MobiDBLite consensus disorder prediction 1 27 - -
Vvi2g373 595 MobiDBLite consensus disorder prediction 72 140 - -
Vvi2g373 595 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 13 128 - -
Vvi2g373 595 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 127 357 - -
Vvi2g373 595 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 358 595 - -
Vvi2g373 595 Gene3D - 418 595 IPR038635 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g373 K12605 CNOT2, NOT2; CCR4-NOT transcription complex subunit 2 - vvi:100263354 1147.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001658 1 7 1 1 1 2 2 2 2 3 2 2 2 2 2 2 2 3 2 2 2 1 2 2 1 2 2 6 6 3 70