Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g374 ATGGCCGCCGACGACGTGTACAGGGCCCTGATGGATCGGTTTCGGAGCTTGGAGCAGAGCCAGGCGAATATGAGAGCCCAGTTGGAGGTGCTGATGGAGGAGCGGAGCAAGGAGGAGAAGGACGGCGGCACTCTGTGGCCGGACAGCGGATGGGGTCACGTTCCGGGGTATTTCTCCGGCGGGGGTCCGTGCCGGAGTGTCTTGGATTCAATGGGTCACTCTGTTTATGCGTTCACGCCTTGGTCTGGGGAGATTTTTTTCTGGAATCGTTCAGCTGAAAAACTCTATGGGTGGAAGGATTGTGAGGTTCTTGGGCAAAGAGTTGTTGACGTTCTTATTGATGAAGCATATTATACACATGTTAAAAAAATCATGGAAAAGTTGACCAATGGGCAATCATGGTCAGGTCAGTTTCCTCTTAAGAAGAGGTCTGGTGAGATATTTATGGCTATAGTGACAAAAAGCCCATTATACGAGGACGGTGATTTTGTTGGTGTTATCACTGTTTCAAGTGATGCAGCTTTATTTAATAATATAACCTCTCAATATCTGAGAGCATATGAGGATCATGCTAATTGCCAACATAGAGTACGGGAGTTAAACCTGAAAAAGATTCAGTGGCAATCACAGCCACAGATTGCATCGTCTGTTTCAAATCCGGCCTCAAAAGTTCTGTCACAAAATTGTGGGGAGGATGCATGCAATCCATTTGCAAGTTCCCAAGAAAAGGGGAAGAACATGCTGGATGCCAAAGATAAGAGTTCAGAGAAGTCTGAAACACTAGCAGCAAAGGTATTAGCGAAGTTGCGCATCAGGGGAAGTGGAAAAAATGCAAAAGAAGATGATAGAAGTTTTCAACAAAATAATTCATCCTATTCTTCAGTATGCAATGAAGGAGAAAATCCCAAGAAAAAAATTGTTTCCTTTGCTGCAGAAAGAGAATATTCAAATGGTAATGAGCACAGGATTCCAAATACTCCTGGAGAGGGTTCTTCCAAAGAGTGCCACAACTGTTTTGCAGTGCCCAGACTCAGATGTTCATCTCCAATATTAACCTTTCAATTGGATGCAAAGGAGTCAGAGCCAGAACTAGAGGACTTGAAAGTCCTGGGGATACAAAGTTCAGTGCAACAGCACCCAGATGTCAATCAATCTCCAGGCACAGGGGGAAGCATCAATAGCAACAATGGAAGTTCATCAAGTAAAACAGATAGTGAGTCAAGCTCAGTCTCAGATTGTGAGATTCAGTGGGAAGACTTACATTTTGGTGAGGAGATTGGCCGAGGTTCATATGCTGCTGTCTATCATGGAATTTGGAATGGATCGGATGTTGCAATTAAGGTTTATTTTGGGAATGAATACAGCGAAGGGACTTTACAAGACTATAAAAAAGAGATTGATATAATGAGGAGATTGAGACATCCAAATGTATTGCTTTTCATGGGAGCAGTATATTCACAAGAGCGACTTGCCATTGTTACAGAGTTGTTACCCAGGGGAAGCCTCTTCAGAGTACTTCACAAAAGCAATCAGGTCTTAGACATCAGGCGGCGTCTCCGGATGGCTCTTGATGTTGCTAGAGGTATGAATTATTTGCATCACAGGAATCCACCAATAGTACATAGAGACCTGAAATCTTCAAACCTGCTAGTTGACAAAAATTGGAATGTCAAGGTTGGTGACTTTGGTCTGTCAAAGTTGAAGCACACTACTTTCTTGACTGCAAAATCTGGAAGAGGAACGCCTCAGTGGATGGCTCCTGAAGTCCTCCGAAACGATCCTTCAAATGAAAAGTCTGATGTGTTCAGCTTTGGGGTCATCCTGTGGGAACTCATGACTCAGTCCATTCCATGGGTCCACCTGAATTCCTTGCAGGTTGTTGGAATTGTAGGCTTCATGGATAGAAGGTTAGATCTTCCAGAAGGCCTTGATCCCCGAGTTTCATCCCTTATCCAAGACTGCTGGAAAACCAACCCAGAGCAACGTCCATCGTTTGTAGACTTAATTCATTGCGTGACATCTTTAATCCAGACATTTGCAACAGAATCCGTCCAGGAAGCTCGGGGCCTTAATTTGCATGTGGTTTAA 2088 44.11 MAADDVYRALMDRFRSLEQSQANMRAQLEVLMEERSKEEKDGGTLWPDSGWGHVPGYFSGGGPCRSVLDSMGHSVYAFTPWSGEIFFWNRSAEKLYGWKDCEVLGQRVVDVLIDEAYYTHVKKIMEKLTNGQSWSGQFPLKKRSGEIFMAIVTKSPLYEDGDFVGVITVSSDAALFNNITSQYLRAYEDHANCQHRVRELNLKKIQWQSQPQIASSVSNPASKVLSQNCGEDACNPFASSQEKGKNMLDAKDKSSEKSETLAAKVLAKLRIRGSGKNAKEDDRSFQQNNSSYSSVCNEGENPKKKIVSFAAEREYSNGNEHRIPNTPGEGSSKECHNCFAVPRLRCSSPILTFQLDAKESEPELEDLKVLGIQSSVQQHPDVNQSPGTGGSINSNNGSSSSKTDSESSSVSDCEIQWEDLHFGEEIGRGSYAAVYHGIWNGSDVAIKVYFGNEYSEGTLQDYKKEIDIMRRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFRVLHKSNQVLDIRRRLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWNVKVGDFGLSKLKHTTFLTAKSGRGTPQWMAPEVLRNDPSNEKSDVFSFGVILWELMTQSIPWVHLNSLQVVGIVGFMDRRLDLPEGLDPRVSSLIQDCWKTNPEQRPSFVDLIHCVTSLIQTFATESVQEARGLNLHVV* 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3631706 3639546 + Vvi2g374 Vvi2g374 783073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g374 695 ProSiteProfiles Protein kinase domain profile. 420 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g374 695 ProSiteProfiles PAS repeat profile. 82 132 IPR000014 -
Vvi2g374 695 CDD STKc_MAP3K-like 426 670 - -
Vvi2g374 695 TIGRFAM sensory_box: PAS domain S-box protein 82 172 IPR000014 -
Vvi2g374 695 SMART serkin_6 420 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g374 695 MobiDBLite consensus disorder prediction 377 410 - -
Vvi2g374 695 Gene3D PAS domain 77 175 - -
Vvi2g374 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
Vvi2g374 695 Coils Coil 14 41 - -
Vvi2g374 695 CDD PAS 83 172 IPR000014 -
Vvi2g374 695 Gene3D Transferase(Phosphotransferase) domain 1 499 685 - -
Vvi2g374 695 PRINTS Tyrosine kinase catalytic domain signature 494 507 IPR001245 GO:0004672|GO:0006468
Vvi2g374 695 PRINTS Tyrosine kinase catalytic domain signature 533 551 IPR001245 GO:0004672|GO:0006468
Vvi2g374 695 PRINTS Tyrosine kinase catalytic domain signature 580 590 IPR001245 GO:0004672|GO:0006468
Vvi2g374 695 PRINTS Tyrosine kinase catalytic domain signature 599 621 IPR001245 GO:0004672|GO:0006468
Vvi2g374 695 PRINTS Tyrosine kinase catalytic domain signature 643 665 IPR001245 GO:0004672|GO:0006468
Vvi2g374 695 Pfam PAS fold 82 167 IPR013767 GO:0006355
Vvi2g374 695 ProSitePatterns Protein kinases ATP-binding region signature. 426 447 IPR017441 GO:0005524
Vvi2g374 695 Pfam Protein tyrosine and serine/threonine kinase 420 671 IPR001245 GO:0004672|GO:0006468
Vvi2g374 695 MobiDBLite consensus disorder prediction 276 299 - -
Vvi2g374 695 SUPERFAMILY PYP-like sensor domain (PAS domain) 65 172 IPR035965 -
Vvi2g374 695 PANTHER SERINE-THREONINE PROTEIN KINASE 10 253 - -
Vvi2g374 695 PANTHER SERINE-THREONINE PROTEIN KINASE 258 683 - -
Vvi2g374 695 MobiDBLite consensus disorder prediction 284 298 - -
Vvi2g374 695 Gene3D Phosphorylase Kinase; domain 1 408 497 - -
Vvi2g374 695 MobiDBLite consensus disorder prediction 236 255 - -
Vvi2g374 695 SUPERFAMILY Protein kinase-like (PK-like) 398 670 IPR011009 -
Vvi2g374 695 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED 258 683 - -
Vvi2g374 695 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED 10 253 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76541 PF07714 PK_Tyr_Ser-Thr 2.00E-64 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g374 - - vvi:100244444 1371.3