Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi2g374 | ATGGCCGCCGACGACGTGTACAGGGCCCTGATGGATCGGTTTCGGAGCTTGGAGCAGAGCCAGGCGAATATGAGAGCCCAGTTGGAGGTGCTGATGGAGGAGCGGAGCAAGGAGGAGAAGGACGGCGGCACTCTGTGGCCGGACAGCGGATGGGGTCACGTTCCGGGGTATTTCTCCGGCGGGGGTCCGTGCCGGAGTGTCTTGGATTCAATGGGTCACTCTGTTTATGCGTTCACGCCTTGGTCTGGGGAGATTTTTTTCTGGAATCGTTCAGCTGAAAAACTCTATGGGTGGAAGGATTGTGAGGTTCTTGGGCAAAGAGTTGTTGACGTTCTTATTGATGAAGCATATTATACACATGTTAAAAAAATCATGGAAAAGTTGACCAATGGGCAATCATGGTCAGGTCAGTTTCCTCTTAAGAAGAGGTCTGGTGAGATATTTATGGCTATAGTGACAAAAAGCCCATTATACGAGGACGGTGATTTTGTTGGTGTTATCACTGTTTCAAGTGATGCAGCTTTATTTAATAATATAACCTCTCAATATCTGAGAGCATATGAGGATCATGCTAATTGCCAACATAGAGTACGGGAGTTAAACCTGAAAAAGATTCAGTGGCAATCACAGCCACAGATTGCATCGTCTGTTTCAAATCCGGCCTCAAAAGTTCTGTCACAAAATTGTGGGGAGGATGCATGCAATCCATTTGCAAGTTCCCAAGAAAAGGGGAAGAACATGCTGGATGCCAAAGATAAGAGTTCAGAGAAGTCTGAAACACTAGCAGCAAAGGTATTAGCGAAGTTGCGCATCAGGGGAAGTGGAAAAAATGCAAAAGAAGATGATAGAAGTTTTCAACAAAATAATTCATCCTATTCTTCAGTATGCAATGAAGGAGAAAATCCCAAGAAAAAAATTGTTTCCTTTGCTGCAGAAAGAGAATATTCAAATGGTAATGAGCACAGGATTCCAAATACTCCTGGAGAGGGTTCTTCCAAAGAGTGCCACAACTGTTTTGCAGTGCCCAGACTCAGATGTTCATCTCCAATATTAACCTTTCAATTGGATGCAAAGGAGTCAGAGCCAGAACTAGAGGACTTGAAAGTCCTGGGGATACAAAGTTCAGTGCAACAGCACCCAGATGTCAATCAATCTCCAGGCACAGGGGGAAGCATCAATAGCAACAATGGAAGTTCATCAAGTAAAACAGATAGTGAGTCAAGCTCAGTCTCAGATTGTGAGATTCAGTGGGAAGACTTACATTTTGGTGAGGAGATTGGCCGAGGTTCATATGCTGCTGTCTATCATGGAATTTGGAATGGATCGGATGTTGCAATTAAGGTTTATTTTGGGAATGAATACAGCGAAGGGACTTTACAAGACTATAAAAAAGAGATTGATATAATGAGGAGATTGAGACATCCAAATGTATTGCTTTTCATGGGAGCAGTATATTCACAAGAGCGACTTGCCATTGTTACAGAGTTGTTACCCAGGGGAAGCCTCTTCAGAGTACTTCACAAAAGCAATCAGGTCTTAGACATCAGGCGGCGTCTCCGGATGGCTCTTGATGTTGCTAGAGGTATGAATTATTTGCATCACAGGAATCCACCAATAGTACATAGAGACCTGAAATCTTCAAACCTGCTAGTTGACAAAAATTGGAATGTCAAGGTTGGTGACTTTGGTCTGTCAAAGTTGAAGCACACTACTTTCTTGACTGCAAAATCTGGAAGAGGAACGCCTCAGTGGATGGCTCCTGAAGTCCTCCGAAACGATCCTTCAAATGAAAAGTCTGATGTGTTCAGCTTTGGGGTCATCCTGTGGGAACTCATGACTCAGTCCATTCCATGGGTCCACCTGAATTCCTTGCAGGTTGTTGGAATTGTAGGCTTCATGGATAGAAGGTTAGATCTTCCAGAAGGCCTTGATCCCCGAGTTTCATCCCTTATCCAAGACTGCTGGAAAACCAACCCAGAGCAACGTCCATCGTTTGTAGACTTAATTCATTGCGTGACATCTTTAATCCAGACATTTGCAACAGAATCCGTCCAGGAAGCTCGGGGCCTTAATTTGCATGTGGTTTAA | 2088 | 44.11 | MAADDVYRALMDRFRSLEQSQANMRAQLEVLMEERSKEEKDGGTLWPDSGWGHVPGYFSGGGPCRSVLDSMGHSVYAFTPWSGEIFFWNRSAEKLYGWKDCEVLGQRVVDVLIDEAYYTHVKKIMEKLTNGQSWSGQFPLKKRSGEIFMAIVTKSPLYEDGDFVGVITVSSDAALFNNITSQYLRAYEDHANCQHRVRELNLKKIQWQSQPQIASSVSNPASKVLSQNCGEDACNPFASSQEKGKNMLDAKDKSSEKSETLAAKVLAKLRIRGSGKNAKEDDRSFQQNNSSYSSVCNEGENPKKKIVSFAAEREYSNGNEHRIPNTPGEGSSKECHNCFAVPRLRCSSPILTFQLDAKESEPELEDLKVLGIQSSVQQHPDVNQSPGTGGSINSNNGSSSSKTDSESSSVSDCEIQWEDLHFGEEIGRGSYAAVYHGIWNGSDVAIKVYFGNEYSEGTLQDYKKEIDIMRRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFRVLHKSNQVLDIRRRLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWNVKVGDFGLSKLKHTTFLTAKSGRGTPQWMAPEVLRNDPSNEKSDVFSFGVILWELMTQSIPWVHLNSLQVVGIVGFMDRRLDLPEGLDPRVSSLIQDCWKTNPEQRPSFVDLIHCVTSLIQTFATESVQEARGLNLHVV* | 696 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3631706 | 3639546 | + | Vvi2g374 | Vvi2g374 | 783073 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi2g374 | 695 | ProSiteProfiles | Protein kinase domain profile. | 420 | 676 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi2g374 | 695 | ProSiteProfiles | PAS repeat profile. | 82 | 132 | IPR000014 | - | |
Vvi2g374 | 695 | CDD | STKc_MAP3K-like | 426 | 670 | - | - | |
Vvi2g374 | 695 | TIGRFAM | sensory_box: PAS domain S-box protein | 82 | 172 | IPR000014 | - | |
Vvi2g374 | 695 | SMART | serkin_6 | 420 | 680 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi2g374 | 695 | MobiDBLite | consensus disorder prediction | 377 | 410 | - | - | |
Vvi2g374 | 695 | Gene3D | PAS domain | 77 | 175 | - | - | |
Vvi2g374 | 695 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 539 | 551 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi2g374 | 695 | Coils | Coil | 14 | 41 | - | - | |
Vvi2g374 | 695 | CDD | PAS | 83 | 172 | IPR000014 | - | |
Vvi2g374 | 695 | Gene3D | Transferase(Phosphotransferase) domain 1 | 499 | 685 | - | - | |
Vvi2g374 | 695 | PRINTS | Tyrosine kinase catalytic domain signature | 494 | 507 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi2g374 | 695 | PRINTS | Tyrosine kinase catalytic domain signature | 533 | 551 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi2g374 | 695 | PRINTS | Tyrosine kinase catalytic domain signature | 580 | 590 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi2g374 | 695 | PRINTS | Tyrosine kinase catalytic domain signature | 599 | 621 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi2g374 | 695 | PRINTS | Tyrosine kinase catalytic domain signature | 643 | 665 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi2g374 | 695 | Pfam | PAS fold | 82 | 167 | IPR013767 | GO:0006355 | |
Vvi2g374 | 695 | ProSitePatterns | Protein kinases ATP-binding region signature. | 426 | 447 | IPR017441 | GO:0005524 | |
Vvi2g374 | 695 | Pfam | Protein tyrosine and serine/threonine kinase | 420 | 671 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi2g374 | 695 | MobiDBLite | consensus disorder prediction | 276 | 299 | - | - | |
Vvi2g374 | 695 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 65 | 172 | IPR035965 | - | |
Vvi2g374 | 695 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 10 | 253 | - | - | |
Vvi2g374 | 695 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 258 | 683 | - | - | |
Vvi2g374 | 695 | MobiDBLite | consensus disorder prediction | 284 | 298 | - | - | |
Vvi2g374 | 695 | Gene3D | Phosphorylase Kinase; domain 1 | 408 | 497 | - | - | |
Vvi2g374 | 695 | MobiDBLite | consensus disorder prediction | 236 | 255 | - | - | |
Vvi2g374 | 695 | SUPERFAMILY | Protein kinase-like (PK-like) | 398 | 670 | IPR011009 | - | |
Vvi2g374 | 695 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED | 258 | 683 | - | - | |
Vvi2g374 | 695 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED | 10 | 253 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76541 | PF07714 | PK_Tyr_Ser-Thr | 2.00E-64 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi2g374 | - | - | vvi:100244444 | 1371.3 |