Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g375 ATGGGTAAAGCATCCAAGTGGTTTCGTGGACTCCTCGGCCTGAAGAAGACTGATTCACCGGCGCCGACCCCGGCTCCGGCACCAGCTCGCCTGGACAAGTCGGTGAAGCGGAGGTGGAGTTTCGTGAGATCATACAGAGAGAAGGATCACACCAGACACGCTAATGACCGCAGAGGAGCCCTGTACGGAGAGCCGCATCCGCCTTCGGCGTACGCAGACGGTGTTGATCCGAACAAGCACGCGATTGCAGTTGCGGCTGCCACCGCTGCGGTAGCGGAGGCCGCCGTAGCTGCAGCTCAGGCCGCTGCGGCGGTGGTGAGGCTCACCAGTAGCGGGAGGTCAGCGGCTCCCTCGGCGTACGTTAGCGCTGGCTTCTCGGCGCGAGAAGAGTGGGCTGTTATAAAAATTCAATCTCTTTTCCGTGGTTACCTGGCGAGAAGGGCATTGCGAGCATTGAAAGCATTGGTGAAGCTACAGGCATTGGTGAGAGGCCACATTGTGAGGAAGCAAACTGCAGATATGTTACGACGCATGCAAGCTTTGGTGAGAGCTCAAGCTCGAGCACGCGCGGGACGAGCCCAGATTTCTGAATCATCACATTCAAGTGGCAAGTCTTCTCAATTCCACCACCCTGGCCCTGCAACCCCTGAAAAGTTTGAACATGCCATTCGGGCAAAGAATATGAAACAAGACCAGTCTTCTATACTCAAGAGAAATAGCTCAAAGGCGAGTGGCAGGAACATCATTGATCAAGACAAAACTCACTTGAGTAGGAACTGGTCAGACCGTAGACTGGATGAAGGATCATGGGACCAACAAGGGTCCTCAATAAGAGCCGGTCCAACAGATGATGAAAAGAGTGACAAGATACTGGAAATTGATACAGGGAAACCCAATTTCACTCCTAAACGCAGAAACCTGTTTCAATCTTCTCATCATGGTGTGGCTTCAGATCAAATTAAAGGCTCCTTTTGCACTGCTGATAATAGTCCACAATTCTATTCGGCATCATCAAGAGCTGGTAGTTCAAGGAGAGGTCCCTTCACTCCCACCAAGAGCGATGGCTCAAGAAGCTACCTGAGTGGTTACTCAGACCATCCAAACTACATGGCTTACACAGAATCCTCGAAGGCTAAAGTGAGGTCTTTCAGTGCCCCAAAACAAAGGCCTCAATACGAAAGATCTAGTTCAACAAAGAGGTATTCTGTTCATGGATTTGGTGATTCAAGGTCAAATGCACAAAGGGTTTCTGCAATGCATGCCAACTTCACCAGCAAAGCTTATCCTGGATCTGGACGCTTGGATAGACTTGGAATGCCAATAAGAAGTGAAGCTTTTGGTCTCAGTGCTGAATCCGTGGTGCAATTTCAGACTCAATTTTCTCTCTTGAAATATTGA 1398 50.21 MGKASKWFRGLLGLKKTDSPAPTPAPAPARLDKSVKRRWSFVRSYREKDHTRHANDRRGALYGEPHPPSAYADGVDPNKHAIAVAAATAAVAEAAVAAAQAAAAVVRLTSSGRSAAPSAYVSAGFSAREEWAVIKIQSLFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQALVRAQARARAGRAQISESSHSSGKSSQFHHPGPATPEKFEHAIRAKNMKQDQSSILKRNSSKASGRNIIDQDKTHLSRNWSDRRLDEGSWDQQGSSIRAGPTDDEKSDKILEIDTGKPNFTPKRRNLFQSSHHGVASDQIKGSFCTADNSPQFYSASSRAGSSRRGPFTPTKSDGSRSYLSGYSDHPNYMAYTESSKAKVRSFSAPKQRPQYERSSSTKRYSVHGFGDSRSNAQRVSAMHANFTSKAYPGSGRLDRLGMPIRSEAFGLSAESVVQFQTQFSLLKY* 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3644700 3649060 + Vvi2g375 Vvi2g375 783074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g375 465 PANTHER IQ-DOMAIN 5-RELATED 8 329 - -
Vvi2g375 465 PANTHER IQ-DOMAIN 5-RELATED 331 438 - -
Vvi2g375 465 Gene3D - 126 183 - -
Vvi2g375 465 Pfam Protein of unknown function (DUF4005) 330 404 IPR025064 -
Vvi2g375 465 MobiDBLite consensus disorder prediction 192 209 - -
Vvi2g375 465 MobiDBLite consensus disorder prediction 189 305 - -
Vvi2g375 465 MobiDBLite consensus disorder prediction 334 360 - -
Vvi2g375 465 MobiDBLite consensus disorder prediction 380 406 - -
Vvi2g375 465 MobiDBLite consensus disorder prediction 46 72 - -
Vvi2g375 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 174 IPR027417 -
Vvi2g375 465 ProSiteProfiles IQ motif profile. 153 180 IPR000048 GO:0005515
Vvi2g375 465 MobiDBLite consensus disorder prediction 228 247 - -
Vvi2g375 465 PANTHER CALMODULIN-BINDING PROTEIN 8 329 - -
Vvi2g375 465 PANTHER CALMODULIN-BINDING PROTEIN 331 438 - -
Vvi2g375 465 Pfam IQ calmodulin-binding motif 153 170 IPR000048 GO:0005515
Vvi2g375 465 Pfam IQ calmodulin-binding motif 131 150 IPR000048 GO:0005515
Vvi2g375 465 MobiDBLite consensus disorder prediction 248 269 - -
Vvi2g375 465 ProSiteProfiles IQ motif profile. 129 157 IPR000048 GO:0005515
Vvi2g375 465 SMART iq_5 128 150 IPR000048 GO:0005515
Vvi2g375 465 SMART iq_5 151 172 IPR000048 GO:0005515
Vvi2g375 465 MobiDBLite consensus disorder prediction 46 60 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g375 - - - vvi:100254717 767.689
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g375 Vvi16g612 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g375 . . Bda06g00076 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0758 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007128 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 37