Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g377 ATGGCGTCATCGTCTTCGATGAGCAACTACGACATGCCATGGGTGGAGAAGTATAGACCCACCAAAGTAGCAGATATTGTTGGCAACGAAGATACCGTCTCTAGGCTCCAAGTCATAGCTCGCGATGGCAATATGCCAAATCTGATCTTATCGGGCCCTCCTGGAACTGGCAAAACCACGAGTGTATTGGCTCTTGCACACGAGCTTTTGGGAGCAAATTACAGGGAGGCGGTATTAGAGTTAAATGCATCAGATGACAGGGGCATTGATGTAGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACATTGCCTTCTGGGAGTCACAAAATAGTCATATTGGATGAAGCTGACAGCATGACAACTGGAGCGCAACAAGCATTGAGACGGACAATGGAAATATATTCAAATTCCACTCGCTTTGCCCTTGCGTGCAATATCTCCTCCAAAATTATTGAGCCTATTCAGAGTAGATGTGCCATTGTTCGATTTTCAAGATTATCTGATCAGGAGATCCTTGGTCGACTGATGGTGGTGGTTGAAGCAGAGAAGGTTCCTTTTGTCCCGGAAGGTCTTGAAGCAATCATCTTTACTGCTGATGGTGATATGAGGCAAGCATTAAATAACTTGCAAGCTACATACAGCGGATTCCGGTTTGTCAACCAAGAAAATGTTTTTAAGGTCTGTGACCAACCTCATCCTTTGCATGTGAAGAATATGGTCCGTAATGTACTTGAGGGGAAATTTGATGATGCTTGTTATGGATTGAAGCAGCTGTATGATCTTGGTTATTCCCCCACTGACATAATCACAACCCTTTTCCGAATCATTAAAAATTATGACATGGCTGAATACCTGAAATTAGAATTCATGAAGGAAACTGGCTTCGCCCATATGAGAATCTGTGATGGAGTTGGTTCGTATCTTCAGCTATGCGGTCTCCTTGCCAAGCTTGCTGTTGTTAGGGAAACAGCAAAAGCATTTTGA 993 43.2 MASSSSMSNYDMPWVEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSVLALAHELLGANYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPSGSHKIVILDEADSMTTGAQQALRRTMEIYSNSTRFALACNISSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVEAEKVPFVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACYGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLAVVRETAKAF* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3662067 3666803 - Vvi2g377 Vvi2g377 783076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g377 330 SMART AAA_5 44 170 IPR003593 -
Vvi2g377 330 Gene3D - 5 169 IPR027417 -
Vvi2g377 330 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 5 328 - -
Vvi2g377 330 Pfam Replication factor C C-terminal domain 234 319 IPR013748 -
Vvi2g377 330 PANTHER REPLICATION FACTOR C SUBUNIT 2 5 328 - -
Vvi2g377 330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 232 IPR027417 -
Vvi2g377 330 Gene3D - 170 233 - -
Vvi2g377 330 Gene3D - 234 326 - -
Vvi2g377 330 CDD HLD_clamp_RFC 169 231 - -
Vvi2g377 330 CDD AAA 27 164 - -
Vvi2g377 330 Pfam ATPase family associated with various cellular activities (AAA) 48 166 IPR003959 GO:0005524|GO:0016887
Vvi2g377 330 SUPERFAMILY post-AAA+ oligomerization domain-like 233 324 IPR008921 GO:0003677|GO:0006260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g377 K10755 - vvi:100246202 652.129