Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g378 ATGCCGCTGAGATTTTGGATTGTGGGGTACGCTTTGCAGTGCATTCTGCACATTGTTTGTGTGTCTGTTGAGTACCGGCGGAGGCGCCGGCGGGCTGGGGTGTTTGGGTCGGAGGACGACGGAATTGGCAGCGGCGGGAGCTACAGTTCAAGCCCGCAGGGGGATTCGTCACAGTATGTTACGTTGGCCAGTCTGGGTGATGAGTCTTCTACAAGCAGTGTTGCAAAACATTTGGAATCTGCAAATACCATGTTCTCATTTATCTGGTGGATCATTGGGTTCTATTGGGTATCTGCGGGCGGCCAAGCTTTGGCACGGGACTCCCCTCAGCTCTACTGGTTATGTATAATTTTTCTGGGTTTTGATGTGTTCTTTGTTGTTTTCTGCGTTGCACTGGCATGTGTCATTGGAATTGCTGTTTGTTGCTGTCTTCCATGTATCATTGCAATTTTATATGCTGTGGCTGATCAGGAAGGAGCATCTAAAGAAGACATTGATCAACTTTCAAGGTTTAAATTCCGGAAGGTTGGTGATATTGAGAAAATTGATGGTGACATTCAAGGAGCTTGTGGAGGAATAATGACTGAATGTGGCACAGATGCACCCACAGAACATGTTCTTTCACAGGAGGATGCGGAGTGTTGCATTTGCCTGTCTGCTTACGATGATGGGGTTGAGCTGCGGGAACTCCCTTGTGGGCACCATTTCCACTGTACCTGTGTTGATAAGTGGCTCTATATCAATGCTACATGTCCTCTCTGCAAATACAACATTTTGAAGAGTAGCAGCAATGGCCGGGAGGAAGTGTAG 810 47.65 MPLRFWIVGYALQCILHIVCVSVEYRRRRRRAGVFGSEDDGIGSGGSYSSSPQGDSSQYVTLASLGDESSTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPQLYWLCIIFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGASKEDIDQLSRFKFRKVGDIEKIDGDIQGACGGIMTECGTDAPTEHVLSQEDAECCICLSAYDDGVELRELPCGHHFHCTCVDKWLYINATCPLCKYNILKSSSNGREEV* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3670618 3678500 + Vvi2g378 Vvi2g378 783077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g378 269 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Vvi2g378 269 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 269 - -
Vvi2g378 269 CDD RING-H2_RNF111_like 213 257 - -
Vvi2g378 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 268 IPR013083 -
Vvi2g378 269 PANTHER TARGET OF ERK KINASE MPK-1 1 269 - -
Vvi2g378 269 SMART ring_2 214 254 IPR001841 -
Vvi2g378 269 Pfam Ring finger domain 213 255 IPR001841 -
Vvi2g378 269 SUPERFAMILY RING/U-box 204 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g378 - - - vri:117932007 496.123
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g378 . . . . . . . . Cmo06g01129 Cmo16g01058 . . . . . Cpe14g00834 . Bhi11g00237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma12g00096 . . . Cma06g01102 . Car06g00939 Car16g00969 Cpe08g00516 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000993 3 3 3 3 3 2 4 2 2 2 2 2 4 2 2 3 2 3 4 2 2 3 2 2 3 2 2 7 6 2 84