Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g38 ATGGCTAGTATTTCAAACTCGTTGCCGCTGAAGCATGGAATCTCTCTCTGGTGTCCTCAACATGCTTCTCTGAATCGGACCCGCCTTCCTTCTTCATTCGGATCATCAGCCTCAGCCAGACGTTACGGCGTCGTTTCGTGTGCTTTCGCTAACGAAAATCGAGAGTTTGTTATCGTCGGCGGTGGAAATGCCGCTGGGTATGCAGCACGGACTTTTGTTGAACACGGTATGGCTGATGGAAAGCTCTGCATTGTATCTAAAGAGGCATTTGCGCCATACGAGCGTCCTGCTTTGACAAAAGGCTATCTGTTCCCTCTGGACAAAAAGCCAGCACGATTACCTGGTTTTCATACTTGTGTTGGATCGGGTGGAGAGAGACAGACCCCTGATTGGTATAAAGAGAAAGGGATAGAGATGTTATATGAAGATCCAGTAACAGGTATTGATATTGAAAAACAAACCCTGATGACAAATTCAGGCAAACTCCTCAAGTATGGATCCCTTATAATTGCTACAGGTTGTACGGCATCAAGACTTCCAGATAAAATAGGAGGAAACTTACCTGGTGTTCATTACATCCGGGATGTTGCAGATGCTGATTCATTGATATCATCATTGGAGAAGGCACGGAAAGTTGTTATTGTTGGTGGTGGTTACATTGGTATGGAGGTTGCTGCAGCGGCTGCAGGTTGGAAACTTGATACCACGATTATATTTCCAGAGGATCATCTTTTGCAAAGATTGTTTACTCCTACACTTGCACGGAGATATGAAGAGTTTTATCAGGAGAATGGTGTCAAATTTGTGAAGGGAGCCTCTATCAAAAACATAGAAGCTGGTTCTGATGGACATGTAACTGCTGTAAAACTTGAAAATGGATCCACCATAGAAGCAGACACGATTATTATTGGTATTGGAGCAAAACCTGCTGTTAGTCCATTTGAAAGGGTGGGCATAAATACCACTGTGGGTGGAATACAGGTTGATGGTCAGTTCCGAACAAGTGTACCTGGAATCTTTGCAATTGGAGATGTGGCTGCATTCCCATTAAAGATGTATAACCGTATTGCACGAGTTGAACATGTTGATCATGCTCGTCGCTCAGCACAGCATTGTATAAATGCATTATTGACTGCAAAAACACATCTATACGATTATCTCCCATATTTTTACTCGAGGGTGTTTGAGTATGAAGGGAGCCCAAGGAAAATATGGTGGCAATTTTTTGGGGACAATGTTGGAGAGACAGTTGAAATAGGGAATTTTGACCCGAAGATTGCTACTTTCTGGATAGATTCTGGTAAACTGAAAGGGGTTCTCCTTGAAAGTGGCAGTCCTGAGGAATTTCAACTCCTTCCGAAGCTCGCAAGGAGCCAACCTCACGTTGATATGACCAAGCTTCAGAAGGCATCTTCGGTTGAGGAGGCACTAGAATTGGCTCATGCATACGTGCAAGCTGGAGCTGCAGTTTAG 1473 43.99 MASISNSLPLKHGISLWCPQHASLNRTRLPSSFGSSASARRYGVVSCAFANENREFVIVGGGNAAGYAARTFVEHGMADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRLPDKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAAAAGWKLDTTIIFPEDHLLQRLFTPTLARRYEEFYQENGVKFVKGASIKNIEAGSDGHVTAVKLENGSTIEADTIIIGIGAKPAVSPFERVGINTTVGGIQVDGQFRTSVPGIFAIGDVAAFPLKMYNRIARVEHVDHARRSAQHCINALLTAKTHLYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPHVDMTKLQKASSVEEALELAHAYVQAGAAV* 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 450004 457491 + Vvi2g38 Vvi2g38 782737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g38 490 Gene3D - 389 475 IPR016156 GO:0016491|GO:0050660
Vvi2g38 490 Gene3D - 57 372 IPR036188 -
Vvi2g38 490 PRINTS FAD-dependent pyridine nucleotide reductase signature 298 314 - -
Vvi2g38 490 PRINTS FAD-dependent pyridine nucleotide reductase signature 324 346 - -
Vvi2g38 490 PRINTS FAD-dependent pyridine nucleotide reductase signature 57 76 - -
Vvi2g38 490 PRINTS FAD-dependent pyridine nucleotide reductase signature 211 229 - -
Vvi2g38 490 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
Vvi2g38 490 Gene3D - 179 306 IPR036188 -
Vvi2g38 490 PRINTS Pyridine nucleotide disulphide reductase class-I signature 55 77 - -
Vvi2g38 490 PRINTS Pyridine nucleotide disulphide reductase class-I signature 211 236 - -
Vvi2g38 490 PRINTS Pyridine nucleotide disulphide reductase class-I signature 299 313 - -
Vvi2g38 490 PRINTS Pyridine nucleotide disulphide reductase class-I signature 339 346 - -
Vvi2g38 490 Pfam Pyridine nucleotide-disulphide oxidoreductase 56 369 IPR023753 GO:0016491
Vvi2g38 490 PANTHER MONODEHYDROASCORBATE REDUCTASE, CHLOROPLASTIC/MITOCHONDRIAL 9 489 - -
Vvi2g38 490 PANTHER APOPTOSIS-INDUCING FACTOR 1 9 489 - -
Vvi2g38 490 SUPERFAMILY FAD/NAD(P)-binding domain 52 350 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g38 K08232 E1.6.5.4; monodehydroascorbate reductase (NADH) [EC:1.6.5.4] - vvi:100253570 987.252
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g38 . . . . . . . Bma14g00599 . . . Cma15g01251 . Car15g01128 . . . . . . . . . . . . . . . . . . . Cone6ag0808 Cone9ag0805 . Csa05g00247 Chy09g01259 . . . . . . Bpe11g00669 . . . . Cmo15g01316 . . . . . Cpe13g00134 Bhi12g00305 . . . . . . Cla01g00231 . Cec01g0229 Cco01g0243 Clacu01g0234 Cmu01g0227 Cre09g2283 Lsi09g00223 . . Cme09g01794
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008344 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34