Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g383 ATGGCGTTGTACGATCGGACGATTCTCGTCACCGGTGGTGCCGGATTCATCGGCACTCACACTGTGGTACAGCTGCTGAGTGAGGGATTCACGGTTTGGATTATCGACAACCTTGATAATTCTGTTCTGGAGGCTATTGAGAGGGTCCGGGACTTGGTCGGTGCTGAGCTCTCTCGGAAACTCCATTTCAATCTGGGTGATCTTAGGAATAAGGCGGATTTGGAGAAGCTTTTTTCTCAAACCAAATTTGATGCTGTGATCCATTTTGCGGGCCTTAAAGCTGTAGGAGAGAGTGTAGTGAATCCTCGCCGCTATTTTGATAACAATTTGATTGGCACAATTAATCTCTATGAGATCATGGCGAAATATAACTGTAAAAAGATGGTTTTCTCATCATCTGCAACTGTTTATGGTCAACCTGACAAAATTCCATGTGTCGAGGATTTCAACTTAATGGCCATGAATCCATATGGCCGTACTAAGCTTTTCCTTGAAGAAATTGCTCGTGACATTCAAAAGGCAGAACCTGATTGGAAAATTATTTTACTGAGGTACTTTAATCCTGTTGGGGCTCATGAAAGTGGTAAACTTGGTGAAGATCCAAAGGGTATCCCAAATAATCTCATGCCCTACATACAACAAGTGGCTGTTGGCAGATTGCCTGAGCTTAATGTTTATGGTCATGACTATCCCACAAGGGATGGTAGTGCGATACGAGACTACATCCATGTTATGGACCTAGCAGACGGTCATATTGCCGCTCTCCGGAAGCTTTTCACATCAGAGGATATAGGCTGCACTGCATACAACTTGGGGACTGGGCAAGGTACATCAGTACTTGAAATGGTTGCTGCATTTGAGAAAGCATCTGGCAAGAAAATCCCTATCAAACTATGTCCAAGGCGAGCAGGGGATGCAACTGCTGTTTACGCTTCTACGGAGAAAGCTGCAAAAGAGCTTGGTTGGAAGGCAAAGTATGGTATAGCGGAGATGTGCAGGGATCAATGGAAGTGGGCTAGTAATAACCCATGGGGGTATCATTCCAAGCCTTGA 1053 44.82 MALYDRTILVTGGAGFIGTHTVVQLLSEGFTVWIIDNLDNSVLEAIERVRDLVGAELSRKLHFNLGDLRNKADLEKLFSQTKFDAVIHFAGLKAVGESVVNPRRYFDNNLIGTINLYEIMAKYNCKKMVFSSSATVYGQPDKIPCVEDFNLMAMNPYGRTKLFLEEIARDIQKAEPDWKIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRLPELNVYGHDYPTRDGSAIRDYIHVMDLADGHIAALRKLFTSEDIGCTAYNLGTGQGTSVLEMVAAFEKASGKKIPIKLCPRRAGDATAVYASTEKAAKELGWKAKYGIAEMCRDQWKWASNNPWGYHSKP* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3729207 3733046 - Vvi2g383 Vvi2g383 783082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g383 350 Gene3D - 8 279 - -
Vvi2g383 350 Gene3D - 197 339 - -
Vvi2g383 350 TIGRFAM galE: UDP-glucose 4-epimerase GalE 8 343 IPR005886 GO:0003978|GO:0006012
Vvi2g383 350 PANTHER BIFUNCTIONAL UDP-GLUCOSE 4-EPIMERASE AND UDP-XYLOSE 4-EPIMERASE 1 5 349 - -
Vvi2g383 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 346 IPR036291 -
Vvi2g383 350 Pfam GDP-mannose 4,6 dehydratase 9 334 IPR016040 -
Vvi2g383 350 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 349 - -
Vvi2g383 350 CDD UDP_G4E_1_SDR_e 7 338 IPR005886 GO:0003978|GO:0006012
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g383 K01784 galE, GALE; UDP-glucose 4-epimerase [EC:5.1.3.2] - vvi:100266776 715.687
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g383 . . . Bda08g00528 . . . . . Cmo16g00593 . . . . . Cpe14g00457 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00541 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009817 2 1 2 2 2 1 1 1 0 1 1 1 1 1 1 1 1 2 1 0 0 1 1 1 1 0 1 2 2 1 33