Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g385 ATGGGCCTTTTCAAAAGCCTCTCCATTTCCTCCTTCCTTCTCGCCACCCTCTTCTTCACCTCCGCCCATGCAGCCATTTTCAATATCCAAAACCATTGCTCCTACACAGTTTGGGCAGCAGCTGTGCCGGGTGGGGGTAGGCGCCTCGACCGGGGACAGTCCTGGAGCCTGACTGTGAACCCTGGCACAACTGGAGCCCGTATTTGGGCCCGGACCGGCTGCAGCTTCGATGGGGCTGGGCGTGGGAGGTGCCAGACCGGGGACTGCGGTGGCGTCCTCCAATGCACAGCCTATGGTGCACCCCCCAACACCTTGGCTGAATTCGCACTTAACCATGCCCCAATTACTCAAGGTATTTCAAGACTAGGTGCCCTGATGCTTACAGCTACCCTAAGGATGATCAAACCAGCACCTTTACATGCCCTGGTGGTACCAACTATGAAGTTATCTTCTGCCCATAAAGCCTCTATTAACTATAGTATGCATGTATTCGCCATAAACTCCCACTTTTCCCGGATTATTGCGTACATGGAATGA 537 53.82 MGLFKSLSISSFLLATLFFTSAHAAIFNIQNHCSYTVWAAAVPGGGRRLDRGQSWSLTVNPGTTGARIWARTGCSFDGAGRGRCQTGDCGGVLQCTAYGAPPNTLAEFALNHAPITQGISRLGALMLTATLRMIKPAPLHALVVPTMKLSSAHKASINYSMHVFAINSHFSRIIAYME* 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3754954 3774888 + Vvi2g385 Vvi2g385 783084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g385 178 Pfam Thaumatin family 31 113 IPR001938 -
Vvi2g385 178 ProSiteProfiles Thaumatin family profile. 24 112 IPR001938 -
Vvi2g385 178 SMART tha2 27 162 IPR001938 -
Vvi2g385 178 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Vvi2g385 178 PRINTS Pathogenesis-related protein signature 45 54 IPR001938 -
Vvi2g385 178 PRINTS Pathogenesis-related protein signature 67 78 IPR001938 -
Vvi2g385 178 PRINTS Pathogenesis-related protein signature 80 109 IPR001938 -
Vvi2g385 178 PANTHER THAUMATIN-RELATED 4 111 - -
Vvi2g385 178 ProSitePatterns Thaumatin family signature. 80 95 IPR017949 -
Vvi2g385 178 SUPERFAMILY Osmotin, thaumatin-like protein 25 113 IPR037176 -
Vvi2g385 178 Gene3D Thaumatin 24 122 IPR037176 -
Vvi2g385 178 PANTHER OS03G0233200 PROTEIN 4 111 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g385 - - - vvi:100259841 228.409
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g385 . . . . . . . . . . . Cma15g01210 . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01195 . . . . . . . . . . . Cmo15g01274 . . . . . . . . . . . . . . . . . . . . . . . Cme09g01731
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000769 1 3 0 2 2 1 3 4 2 3 2 2 6 4 3 7 2 3 2 3 3 4 5 2 6 4 5 3 2 3 92