Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g386 ATGGGCCTCTTCAAAAGCCTCTCCATTTCCTCCTTCCTTCTCATCACCCTCTTCTTCACCTCCGCCCATGCAGCCATTTTCAATATCCAAAACCGTTCCTATGGTGCACCCCCCAACACCTTGGCTGAATTCGCACTTAACCAGTTCAACAACCTGGACTTCTTTGATATATCCTTGGTCGATGGGTTTAATGTGCCTATGGCTTTTAACCCTACCTCCAATGGGTATTTCAAGACTAGGTGCCCTGATGCTTACAGCTACCCTAAGGATGATCAAACCAGCACCTTTACATGCCCTGGTGGTACCAACTATGATGTTATCTTCTGCCCATAA 333 46.85 MGLFKSLSISSFLLITLFFTSAHAAIFNIQNRSYGAPPNTLAEFALNQFNNLDFFDISLVDGFNVPMAFNPTSNGYFKTRCPDAYSYPKDDQTSTFTCPGGTNYDVIFCP* 111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3775418 3776265 + Vvi2g386 Vvi2g386 783085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g386 110 Gene3D Thaumatin 75 110 IPR037176 -
Vvi2g386 110 Pfam Thaumatin family 33 72 IPR001938 -
Vvi2g386 110 Pfam Thaumatin family 75 110 IPR001938 -
Vvi2g386 110 PRINTS Pathogenesis-related protein signature 16 45 IPR001938 -
Vvi2g386 110 PRINTS Pathogenesis-related protein signature 53 69 IPR001938 -
Vvi2g386 110 PRINTS Pathogenesis-related protein signature 100 109 IPR001938 -
Vvi2g386 110 PANTHER OS03G0233200 PROTEIN 31 75 IPR001938 -
Vvi2g386 110 PANTHER OS03G0233200 PROTEIN 4 32 IPR001938 -
Vvi2g386 110 PANTHER OS03G0233200 PROTEIN 75 110 IPR001938 -
Vvi2g386 110 SUPERFAMILY Osmotin, thaumatin-like protein 33 110 IPR037176 -
Vvi2g386 110 ProSiteProfiles Thaumatin family profile. 31 110 IPR001938 -
Vvi2g386 110 SMART tha2 2 110 IPR001938 -
Vvi2g386 110 Gene3D Thaumatin 21 74 IPR037176 -
Vvi2g386 110 PANTHER THAUMATIN-RELATED 4 32 - -
Vvi2g386 110 PANTHER THAUMATIN-RELATED 75 110 - -
Vvi2g386 110 PANTHER THAUMATIN-RELATED 31 75 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g386 - - - vvi:100259841 149.443
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g386 . . . . . . . . . . . Cma15g01208 . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01194 . . . . . . . . . . . Cmo15g01273 . . . . . . . . . . . . . . . . . . . . Lsi09g00292 . . Cme09g01730
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020852 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 2 3