Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g388 ATGGGCCTTTTCAAAAGCCTCTCCATTTCCTCCTTCCTTCTCGCCACCCTCTTCTTCACCTCCGCCCATGCAGCCATTTTTAATATCCAAAACCATTGCTCCTACACAGTTTGGGCAGCAGCTGTGCCGGGTGGGGGTAGGCGCCTCGACCGGGGACAGTCCTGGAGCCTGACTGTGAACCCTGGCACAACTGGAGCCCGTATTTGGGCCCGGACCGGCTGCAGCTTCGATGGGGCTGGGCGTGGGAGGTGCCAGACCGGGGACTGCGGTGGCGTCCTCCAATGCACAGCCTATGGTGCACCCCCCAACACCTTGGCTGAATTCGCACTTAACCAGTTCAACAACCTGGACTTCTTTGATATATCCTTGGTCGATGGGTTTAATGTGCCTATGGCCTTTAACCCTACCTCCAATGGGTGCACCCATTACTCAAGGTATTTCAAGACTAGGTGCCCTGATGCTTACAGCTACCCTAAGGATGATCAAACCAGCACCTTTACATGCCCTGGTGGTACCAACTATGATGTTATCTTCTGCCCATAA 543 54.33 MGLFKSLSISSFLLATLFFTSAHAAIFNIQNHCSYTVWAAAVPGGGRRLDRGQSWSLTVNPGTTGARIWARTGCSFDGAGRGRCQTGDCGGVLQCTAYGAPPNTLAEFALNQFNNLDFFDISLVDGFNVPMAFNPTSNGCTHYSRYFKTRCPDAYSYPKDDQTSTFTCPGGTNYDVIFCP* 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3796864 3797720 + Vvi2g388 Vvi2g388 783087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g388 180 Pfam Thaumatin family 141 180 IPR001938 -
Vvi2g388 180 Pfam Thaumatin family 31 137 IPR001938 -
Vvi2g388 180 Gene3D Thaumatin 140 180 IPR037176 -
Vvi2g388 180 Gene3D Thaumatin 24 139 IPR037176 -
Vvi2g388 180 ProSiteProfiles Thaumatin family profile. 24 180 IPR001938 -
Vvi2g388 180 PANTHER THAUMATIN-RELATED 4 141 - -
Vvi2g388 180 PANTHER THAUMATIN-RELATED 141 180 - -
Vvi2g388 180 SMART tha2 27 180 IPR001938 -
Vvi2g388 180 ProSitePatterns Thaumatin family signature. 80 95 IPR017949 -
Vvi2g388 180 CDD TLP-P 27 180 - -
Vvi2g388 180 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Vvi2g388 180 PRINTS Pathogenesis-related protein signature 45 54 IPR001938 -
Vvi2g388 180 PRINTS Pathogenesis-related protein signature 67 78 IPR001938 -
Vvi2g388 180 PRINTS Pathogenesis-related protein signature 80 109 IPR001938 -
Vvi2g388 180 PRINTS Pathogenesis-related protein signature 117 133 IPR001938 -
Vvi2g388 180 PRINTS Pathogenesis-related protein signature 170 179 IPR001938 -
Vvi2g388 180 PIRSF PR5 2 142 IPR001938 -
Vvi2g388 180 PIRSF PR5 134 180 IPR001938 -
Vvi2g388 180 PANTHER OS03G0233200 PROTEIN 4 141 IPR001938 -
Vvi2g388 180 PANTHER OS03G0233200 PROTEIN 141 180 IPR001938 -
Vvi2g388 180 SUPERFAMILY Osmotin, thaumatin-like protein 25 180 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g388 - - - vvi:100259841 356.681
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g388 . . . . . . . . . . . Cma15g01207 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00314 . . . . . . . Bpe11g00682 . . . . Cmo15g01272 . . . . . Cpe13g00169 . . . . . . . Cla01g00291 Cam01g0302 Cec01g0294 Cco01g0309 Clacu01g0302 Cmu01g0287 Cre09g2220 Lsi09g00294 . . Cme09g01729
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000769 1 3 0 2 2 1 3 4 2 3 2 2 6 4 3 7 2 3 2 3 3 4 5 2 6 4 5 3 2 3 92