Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g392 ATGAAACTTGTCAACCTATTTAACTTCTTTAACAAAAACATAGTTTTTGGGATCATCCCCAAACTTTTATCCTCACGAGGAGCCGCCTGTACTTTAATGAGAAAAGTAGAGACGTGCCTTTATTTGCACCAAGCCAAAACGCAGCGTTTCCTCTATATAAACCCCCTGGTGTCATTGATGAGGCACAAGCCAAAATACACCACACCTGACATCTATACTCCGATTGTCAGCTCCAAGCTTCCCAGTATGAGCGACTTGCGCATCCTCTTTATCTTCTTCCTCTGCTTCATCTCCTCCATCCATGCAGCCACCTTCCAAATCACCAACCAGTGTTCTTACACCGTCTGGGCAGCTGCCTCTCCCGGTGGCGGCCGCCGCCTGGACCGCGGCCAAAGCTGGACCCTCAACGTGCCCGCTGGCACCAAAATGGCCCGAATCTGGGGTCGAACCAACTGCCACTTCGATGCCAGTGGTCGTGGCCGGTGCGATACCGGTGACTGTGGCGGCGTCCTGAACTGTCAAGGCTGGGGTTCTCCACCAAACACACTAGCAGAATACGCCTTGAACCAGTTTGGTAACAAGGATTTTTTCGATATATCTCTCGTTGATGGGTTCAACATCCCTATGGACTTCAGCCCCACCAGCCGCGGGTGCCGTGGAATCAAGTGCCCAGATGCGTACAGTTATCCTCAGGATGATCCCACAAGCACATTTACATGCCCTGGTGGAACCAACTATAGGGTTGTGTTCTGCCCTAGAGGCTCTTCCAACAATATTTTTCCTCTGGAGATGTATGGAAGTGATAGTGAGGAGTAA 816 50.61 MKLVNLFNFFNKNIVFGIIPKLLSSRGAACTLMRKVETCLYLHQAKTQRFLYINPLVSLMRHKPKYTTPDIYTPIVSSKLPSMSDLRILFIFFLCFISSIHAATFQITNQCSYTVWAAASPGGGRRLDRGQSWTLNVPAGTKMARIWGRTNCHFDASGRGRCDTGDCGGVLNCQGWGSPPNTLAEYALNQFGNKDFFDISLVDGFNIPMDFSPTSRGCRGIKCPDAYSYPQDDPTSTFTCPGGTNYRVVFCPRGSSNNIFPLEMYGSDSEE* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3822829 3825957 + Vvi2g392 Vvi2g392 783091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g392 271 PRINTS Pathogenesis-related protein signature 104 116 IPR001938 -
Vvi2g392 271 PRINTS Pathogenesis-related protein signature 123 132 IPR001938 -
Vvi2g392 271 PRINTS Pathogenesis-related protein signature 145 156 IPR001938 -
Vvi2g392 271 PRINTS Pathogenesis-related protein signature 158 187 IPR001938 -
Vvi2g392 271 PRINTS Pathogenesis-related protein signature 195 211 IPR001938 -
Vvi2g392 271 PRINTS Pathogenesis-related protein signature 242 251 IPR001938 -
Vvi2g392 271 Gene3D Thaumatin 103 222 IPR037176 -
Vvi2g392 271 Gene3D Thaumatin 223 254 IPR037176 -
Vvi2g392 271 ProSiteProfiles Thaumatin family profile. 102 254 IPR001938 -
Vvi2g392 271 SMART tha2 105 252 IPR001938 -
Vvi2g392 271 SUPERFAMILY Osmotin, thaumatin-like protein 103 253 IPR037176 -
Vvi2g392 271 ProSitePatterns Thaumatin family signature. 158 173 IPR017949 -
Vvi2g392 271 PANTHER OS03G0233200 PROTEIN 88 223 IPR001938 -
Vvi2g392 271 PANTHER OS03G0233200 PROTEIN 222 252 IPR001938 -
Vvi2g392 271 Pfam Thaumatin family 109 215 IPR001938 -
Vvi2g392 271 Pfam Thaumatin family 222 252 IPR001938 -
Vvi2g392 271 CDD TLP-P 105 252 - -
Vvi2g392 271 PANTHER PATHOGENESIS-RELATED PROTEIN R MINOR FORM 222 252 - -
Vvi2g392 271 PANTHER PATHOGENESIS-RELATED PROTEIN R MINOR FORM 88 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g392 - - - vvi:100263272 421.009
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g392 . . . . . . . . . . . Cma15g01205 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00315 . . . . . . . . . . . . Cmo15g01271 . . . . . . . . . . . . . . . . . . . . Lsi09g00295 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000769 1 3 0 2 2 1 3 4 2 3 2 2 6 4 3 7 2 3 2 3 3 4 5 2 6 4 5 3 2 3 92