Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g394 ATGGATGAAGCAGCTTTAACTGAAGGAACCAATCTCTTTCCTTTGATCCTTCTTCTCCTGCCTCTCATCTTTCTCATCCTCAAGCATCTCAAATCAAAGTCTCCAATATCACTTCCACCGGGTCCATATCCATGGCCAATCATAGGCAACGTTCACCAGATAGGGAAACAGCGTCATATAGCTATGGCCGACTTTGCACGATCCTATGGTCCGCTCTTCTCACTACGACTCGGAACTCAAACTCTGATCGTGGGATCATCGGCGGCCGCCGCCAAAGAAATTCTCAGCTCTTATGACCGTATTTTCTGTGCCCGATATGTTCCGGGAGTGATGCCAGAAAAGAGCTCAGAATTCTATAATAACTCAATAGTATGGTCGCTTGAGTGTGATGACAGATGGAAGTACTTGCGTACAATGTGCCGAACTCAACTTTTCTCGGGCAAAGCCATCGAGTCACAAGCATGTTTACGAGAGAAAAAACTGATGGAGGTGGTTGGATTCTTGAGCTCAATGGAGGGTAGGGTGGTGAAACTTAAAGAACTAGCCTTTGTTACTGCACTGAATATGATAAGTAATGCTCTATTATCAAAAGATCTAGTCAGTTTGGAGGATGAGACTGCAGTTGCGAGGATGCTAGGATGTGTCAAGAAAACCGTGGACGTGATGTCTACTCCAAATTTAGCTGATTATTATCCAATTCTACGTGGGTTGGATCTTCAGAGGTTACAGAAGAAATCCAGGGATTCCTTTGTGGAGTTGTTTAGTCTGTGGCAGCCTATCGTTAAAGAAAGAAGAGAAAGAAAAGGGAGCCATGCTACTAGGCAACATGATTTTCTCGATGCTCTAATCAACGATGGTTTTACAGATGATCGGATTAACTTTTTACTTGGGGAGCTACTTATTGCTGGTACAGAATCTACTAGTGTAACCACTGAGTGGGCAATGGCAGAGTTGATAAGAAGTCCAGACTCCATGAAGAAAATCCGTGAAGAACTCACCACAGAGATCAACAAAAGCACACTGAAAGATTCCGATCTACGGAAGCTACCGTACCTTCAAGCTTGCCTCAAGGAAACCCTGAGGCTGCATCCACCTGGACCATTTCTCCTTCCTCACCGTGCACTTGAATCATGCAAAGTGATGAACTATACGATTCCAAAAGATGCTCAAGTACTGGTAAACGCCTGGGCCATTGGAAGAGACCCCATGAGTTGGGAAGACCCTTTAGTATTCAAACCAGAGCGCTTCCTGAACTCAATTGTGGATTTTCAAGGGACTAATTTTGAATTCATACCCTTCGGCGCAGGAAGGAGAATCTGCCCTGGACTTCCCATGGCTGTAAAGCTGATTCCCCCGGTTCTGGTTTCCTGGATTCATTTCTTTGATTGGTCTCTTCCGAATTGGGGTGATCCTAAAGAGATAGACATGAGGGAAAAGTTTGGTGCCAATATACAGAAGGAACATCCTCTACTTCTCATTCCTAAAGTTAGAAAATGGCCACAAGTTTGTGCCTAA 1515 44.49 MDEAALTEGTNLFPLILLLLPLIFLILKHLKSKSPISLPPGPYPWPIIGNVHQIGKQRHIAMADFARSYGPLFSLRLGTQTLIVGSSAAAAKEILSSYDRIFCARYVPGVMPEKSSEFYNNSIVWSLECDDRWKYLRTMCRTQLFSGKAIESQACLREKKLMEVVGFLSSMEGRVVKLKELAFVTALNMISNALLSKDLVSLEDETAVARMLGCVKKTVDVMSTPNLADYYPILRGLDLQRLQKKSRDSFVELFSLWQPIVKERRERKGSHATRQHDFLDALINDGFTDDRINFLLGELLIAGTESTSVTTEWAMAELIRSPDSMKKIREELTTEINKSTLKDSDLRKLPYLQACLKETLRLHPPGPFLLPHRALESCKVMNYTIPKDAQVLVNAWAIGRDPMSWEDPLVFKPERFLNSIVDFQGTNFEFIPFGAGRRICPGLPMAVKLIPPVLVSWIHFFDWSLPNWGDPKEIDMREKFGANIQKEHPLLLIPKVRKWPQVCA* 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3833680 3835488 - Vvi2g394 Vvi2g394 783093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g394 504 Pfam Cytochrome P450 39 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g394 504 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g394 504 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g394 504 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g394 504 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g394 504 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g394 504 PRINTS E-class P450 group I signature 430 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g394 504 PRINTS E-class P450 group I signature 440 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g394 504 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g394 504 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g394 504 PRINTS P450 superfamily signature 431 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g394 504 PANTHER 3'-HYDROXYLASE ISOZYME, PUTATIVE-RELATED 11 498 - -
Vvi2g394 504 SUPERFAMILY Cytochrome P450 39 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g394 504 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 433 442 IPR017972 GO:0005506|GO:0016705
Vvi2g394 504 Gene3D Cytochrome P450 25 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g394 504 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 11 498 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g394 - - - vvi:100244525 999.579
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g394 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo15g01485 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000969 6 2 3 2 3 2 1 3 3 2 3 2 1 1 1 2 2 11 1 3 2 3 2 3 3 3 0 2 4 4 80