Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g395 ATGCTTGATGATGTTTGGCAGGAGCTAGTCGTTGCTGATACGGACACTAGTAGAGTAACCGCTGAGTGGGCAATGGGAGAGTCCATGAAGAAAATCCCTGAAGAACTCACCACTGAGATCAACCAAAACACGCTGAAAGATTCCGACCTTCAGAAGTTACCATACCTTCAAGCTTGCCTCAAGGAAACCCTGAGGCTGCACCCACCTGGACCTCTTCATAATTTTGAATTCATACCCTATAGTTCAGGAAGGAGAATCTGCCCTGGACTTCCCATGGCTGTAAAACTGATTCCCTTGGTTCTGGCTTCCTGGATTCATTTCTTTGAATGGTCTCTTCCGAATGGAGGTGATCCTACGATAGACACGAGTGATAAGTATGGAGTCAGTGTCCTTCCTTCGATCCTTCCTCTCCCGCCTCTCATCTTTCTCATCCTCAAGCATCTCAAAGCAAAGTCTCCATCACTTCCACCGGGTCCATATCCATGGCCACTCATAGGCAACGTTCACCAGATAGGGAAACAACGCCATATTGCTATGATCGACTTTGCACGATCGTATGTTCCACTCTTCTCGCTAAGACTAGGAACTCAAACTTTGGTCGTGGGATCATCAGCTGCCGCTGCCAGAGAAATTCTCAACTCCTATGACCACATTTTATGTGCCCGATGTGTTCCTCGAGTGATACCATGCAGAATAACTGGTTTGAACGGGTTCGCAGTAGGGTGGTCTCCCGAGTGTGATGACAGGTGGAAGTATTTGCGCACAATGTGTCGAACTCAACTTTTCTCAGGCAAAGCAATAGAGTCACAAGCATGCTTGCGAGAGAAAAAGCTGATGGAGGTGGTTATGTTTTTGAGTTCAATGGAGGGTAAGGTGACGTCTACTCCAAATTTATCTGACTACTATCCAATTCTTAGAGGGTTGGATCTTCAAAGACTGCAGAAGAGGTCCATCATTTCCTTTGTGAAGTTTTGTAGTATACTGAAGCCTATCATTAAAGAAAGAAGAGAAAGAAAAGGCGGCCATGCTACTAGCCAACAAGATTTTCTTGATACTCTGATAAGCGATGGTTTTACAGATGATCAGATCAACATTTTACTTGTGGAGCTACTCGTTGCTGGTACAGACTCTAGTAGTGTAACCGTTGAGTGGGCAATGGCAGAGTTGATAAGAAGTCCAGAATCCTTGAAGAAAATCCGTGAAGAACTCACCACAGAGATCAACCAAAACATGCTGAAAGATTCCGATCTACGGAAGCTACCATACCTTCAAGCTTGCCTCAAGGAAACCCTGAGGCTGCACCCGCCTGGACCTTTTCTCCTTCCTCACCGCGCTGTCGAATCATGCAAAGTAATGAACTATACCATTCCAAAAGATGCTCAAGTACTAGTAAACGCCTGGGCCATTGGAAGAGACCCCATGAGTTGGGAAGACCCTTTAGTATTCAAACCAGAGCGTTTCTTGAACTCAACTGTGGATTTTCAAGGGAATAATTTTGAATTTATACCCTTTAGTTCACGAAGGAGAATCTGCCCTGGACTTCCCATGGCGGTAAAACTGATTCCCTTGGTTCTGGCTTCCTGGATTCATTTCTTCGATTGGTCTCTTCCGAATGGGGGTGATCCTAAAGATATAGACATGAGTGAAAAGTATAGTGCCAATATACGGAAGGAACAGCCTCTACTTCTCATTCCTAAAGGCAGAAAATGA 1710 45.09 MLDDVWQELVVADTDTSRVTAEWAMGESMKKIPEELTTEINQNTLKDSDLQKLPYLQACLKETLRLHPPGPLHNFEFIPYSSGRRICPGLPMAVKLIPLVLASWIHFFEWSLPNGGDPTIDTSDKYGVSVLPSILPLPPLIFLILKHLKAKSPSLPPGPYPWPLIGNVHQIGKQRHIAMIDFARSYVPLFSLRLGTQTLVVGSSAAAAREILNSYDHILCARCVPRVIPCRITGLNGFAVGWSPECDDRWKYLRTMCRTQLFSGKAIESQACLREKKLMEVVMFLSSMEGKVTSTPNLSDYYPILRGLDLQRLQKRSIISFVKFCSILKPIIKERRERKGGHATSQQDFLDTLISDGFTDDQINILLVELLVAGTDSSSVTVEWAMAELIRSPESLKKIREELTTEINQNMLKDSDLRKLPYLQACLKETLRLHPPGPFLLPHRAVESCKVMNYTIPKDAQVLVNAWAIGRDPMSWEDPLVFKPERFLNSTVDFQGNNFEFIPFSSRRRICPGLPMAVKLIPLVLASWIHFFDWSLPNGGDPKDIDMSEKYSANIRKEQPLLLIPKGRK* 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3838089 3841971 - Vvi2g395 Vvi2g395 783094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g395 569 Pfam Cytochrome P450 156 268 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 Pfam Cytochrome P450 8 72 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 Pfam Cytochrome P450 73 127 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 Pfam Cytochrome P450 273 549 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 Gene3D Cytochrome P450 1 73 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 PRINTS P450 superfamily signature 373 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 PRINTS P450 superfamily signature 425 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 PRINTS P450 superfamily signature 502 511 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 PANTHER 3'-HYDROXYLASE ISOZYME, PUTATIVE-RELATED 292 569 - -
Vvi2g395 569 PANTHER 3'-HYDROXYLASE ISOZYME, PUTATIVE-RELATED 3 72 - -
Vvi2g395 569 PANTHER 3'-HYDROXYLASE ISOZYME, PUTATIVE-RELATED 74 130 - -
Vvi2g395 569 PANTHER 3'-HYDROXYLASE ISOZYME, PUTATIVE-RELATED 132 292 - -
Vvi2g395 569 SUPERFAMILY Cytochrome P450 156 568 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 PRINTS E-class P450 group I signature 183 202 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 PRINTS E-class P450 group I signature 424 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 PRINTS E-class P450 group I signature 465 489 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 PRINTS E-class P450 group I signature 501 511 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 PRINTS E-class P450 group I signature 511 534 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 Gene3D Cytochrome P450 143 563 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 Gene3D Cytochrome P450 74 130 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 SUPERFAMILY Cytochrome P450 6 132 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g395 569 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 74 130 - -
Vvi2g395 569 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 132 292 - -
Vvi2g395 569 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 292 569 - -
Vvi2g395 569 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 3 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g395 - - - vvi:100249676 847.04
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g395 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000969 6 2 3 2 3 2 1 3 3 2 3 2 1 1 1 2 2 11 1 3 2 3 2 3 3 3 0 2 4 4 80