Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g396 ATGGGTACTGGTGTCTCCCTTCTTGCTTGTGAAAATGAAGGGTGTCCTTCTCGACCCAGGCTTGGAGATTTGCCTGAGGACTGTGTGGCTTTGGTACTGTCGTACTTGGATCCACCAGAAATTTGCAAATTGGCCAAGCTGAATCGGGCGTTTCGCGGGGCTTCTCGGGCTGATCTCGTTTGGGAGCCCAAGTTGCCCTCCAATTATTGTTTGGTTATCGAGAAAGTGTTTAAGGATTTTCCCGAAAATTTGTGTAAGAAAGAGATTTATGCCAGATTGTGTCAGCCTAACCCCTTTGATGGAGGCACAAAGAAGGCTTGGCTGGATAAGAGAACAGGCGGTGTCTGTTTGTCAATCTCTTCAAAGGGATTAGCAATCACCGGAATCGATGATCGGAGATACTGGACCTACATTCCAACTGAAGAATCCAGGTTCAACACTGTTGCATATGTTCAGCAAATCTGGTGGCTTGAGGTTGATGGGGAGGTCGATTTCCCATTTCCAGCAGGAACTTATAGCATATTCTTCAGGCTGCAGTTGGGGCGGGCTTCCAAGAGGCTTGGCCGTAGGATCTGTAACCCCGAGCACGTACATGGTTGGGACATAAAGCCAGTGCGTTTCCAGCTATGGACTTCAGATGGTCAACATGCCACATCTCAGTGTTTCTTGGATGAACCTGGAAGGTGGATTCAGTACCATGCAGCAGACTTTGTTGTTGATAACTCTAATGCACCAACAAAGATTAAATTCTCAATGACCCAGATCGATTGCACACACACCAAAGGTGGTCTTTGTGTAGACTCTGTTCTGATATACCCAAGAGAATTTAGGGAAAGAGAAATTATAAATGTTAGTTCAAAGGAGAGTTTATTTTTTGTTTCTTTATCTTGCCTATTTCTTTGGGAATACACATTGGGTGTATTTTATTGA 930 44.84 MGTGVSLLACENEGCPSRPRLGDLPEDCVALVLSYLDPPEICKLAKLNRAFRGASRADLVWEPKLPSNYCLVIEKVFKDFPENLCKKEIYARLCQPNPFDGGTKKAWLDKRTGGVCLSISSKGLAITGIDDRRYWTYIPTEESRFNTVAYVQQIWWLEVDGEVDFPFPAGTYSIFFRLQLGRASKRLGRRICNPEHVHGWDIKPVRFQLWTSDGQHATSQCFLDEPGRWIQYHAADFVVDNSNAPTKIKFSMTQIDCTHTKGGLCVDSVLIYPREFREREIINVSSKESLFFVSLSCLFLWEYTLGVFY* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3852687 3856475 + Vvi2g396 Vvi2g396 783095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g396 309 PANTHER F-BOX PROTEIN PP2-A12 1 281 - -
Vvi2g396 309 SUPERFAMILY F-box domain 11 94 IPR036047 GO:0005515
Vvi2g396 309 Pfam F-box domain 23 60 IPR001810 GO:0005515
Vvi2g396 309 SMART fbox_2 24 64 IPR001810 GO:0005515
Vvi2g396 309 Pfam Phloem protein 2 115 273 IPR025886 -
Vvi2g396 309 Gene3D - 9 109 - -
Vvi2g396 309 PANTHER F-BOX PROTEIN PP2-A15 1 281 - -
Vvi2g396 309 ProSiteProfiles F-box domain profile. 18 64 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g396 - - - vvi:100241013 594.734
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g396 Vvi15g555 ECH
Vvi2g396 Vvi16g604 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g396 . . Bda06g00074 . . Bpe07g00125 . . Cmo06g01134 Cmo16g01048 . . . . . . . . . . . . . . Cla10g00351 Cam10g0363 Cec10g0381 Cco10g0376 Clacu10g0367 Cmu10g1203 Cre10g0618 . . . . Lsi07g01414 . . Cme06g02700 . . . . . . . Bma12g00101 . . . Cma06g01106 Cma16g01005 Car06g00943 . Cpe08g00511 . . . . . . . . . . . . . . . . Csa03g00373 Chy06g01940 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001664 6 3 1 3 3 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 2 2 1 3 2 2 70