Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g397 ATGGACCCAAATAACACAATGAACTCAAGTCTGAGTGTTTGGGCAAGTTCTTTGATAATAGATTCTTTGTCCACAGATGGCAACTTGTTACTTTCTGGAGGTCCCCAATCGTGGAGAAGCGCTAGCACCAACATGGAGTCCTACCTTAGCTTACCCTCATCTCCTATGTCATTCTCATCACATAATCTAAGCATCTCAGGCTCTTCTGGTATTGATATTGTTAATGCTACATCTCAGCCACCATCTCAAACACATTACCTTTCACTTCTTACTGGCATAAAACAGGAGCCTGATAATTCTACCCAGATGCCTAAAAAACCCAGACTAGAAGTCCAGGAAGAAGATTTTCTGCACCAGCAGATAATTCAACAACTGCTGCAGAGGAAGGACTCTTTGCAATTGCAAGGTCATAATCCGCACCTACAAGCCTGGATTCAGCAGCATAAAATGCGAAATCAGCAGCATCAAAAGATTTTGCAGTCTATTCAACAGTTGCAAGGCGTTGACATGCAACAACAGCAGCAACAAATGAGGAACCAGCTGCAACAGCAGGGTACACATGAAGTATCTGCCATGCGCCCCTCTGATTCTGGTATATGTTCTCGCCGACTAATGCAGTACATGTATCATCAGCGGCATCGACCACCTGACAATGCCATTTCCTACTGGAGGAAATTTGTAGCGGAGTATTATTCTCCTTGTGCCAAGAAAAGGTGGTGTTTATCTTTGTATGATAATGTTGGACATCATGCCAAAGGTGTTTTTCCTCAGTCAGCTATGGATACATGGCAGTGTGACATTTGTGGTTCTAGATCAGGGAGGGGATTTGAGGCAATTTTTGAAGTGCTTCCTCAGCTTATTAAAATAAACTTTGAGAGTGGTGTTATCGATGAGCTTTTGTTCGTAGATTTGCCTCATGAAAGTAGATTCTCTTCTGGATTAATGATGTTAGAATATGGAAAAGCAGTTCAGGAGAGTGTCTATGAGCAACTTCGCGTTGTTCGTGAGGGTCAACTTCGCATTATTTTCACTCATGATTTGAAGATACTGTCTTGGGAGTTTTGCACAAGGCATCATGAAGAACTTTTGCCTCGTCAGTTGGTTGCACCTCAGGTTAATCAGTTAGTTCATGCTGCCCAGAAGTATCAAACCACAATGAATGGAAGTAAATCTGATGGGTTTTGTGCACAAGATTTGCTAGTAAATTGCAATAGGTTTCTGAGAGCTGGGCATCAGCTTGCAAGAAATTTGGAGTTGCAGTTGGTAGATGAGTTGGGATTTTCAAAAAGATATGTTCGATGCTTGCAGATAGCTGAGGTCGTTGATAGTATGAAAGACTTGATGATTTTTGTGAGGGATAGCAACATTGGGCCAATCGAGAGCTTGAAAAATTATCCTCGGGAAGCAACCACAGTCAAGATTAAGAAAAAACAACTGCATCACGGGGAGCAGCCAGAGAGTGGTCAAGATTCCCCGAGCAACAGGGCTTCTAATTTGAGGGATATCTCCAGTGGGCTTATGACAGGCTCAGAAGAGGGAGCACTTGCACTGACCACTCGGTACCAGAAAATGATGCGACAAAGCTCCTTGAACTCAAATTCAAGCACAGTGAAACAGGAACCTTGTTTGTTCAACAGTTCTATCCCAGGTGCATCTTCTTTACCTGTTCAGCGCCCTAAATCCTCAAGTCCTGGACTCATCCAGATCCCCCCACCAGTTAATTCCTCCTCGAGTATCCATTCTTCTCAAGGCAGTCAAAATACGCAGCATTGCATGATCCAGAAGTTACTTCAGGAGATGATGAACAACAACAGAGCAAAAGGGTTACACAATTCAAATGGGGGTGAGGAAGAAGTCTTATGCGGCATTAATACAAGTACAATTGGTGGCTTACCTAAAAAGGCCAGGGGAACTAGTGTCGTTCGGAATGAGCTAGGTTGTAGAGACAGCACTGCAGCTGTGGCCTCCCCAGCAAATGTGTTGGGCAGTTTTGTCGGGAGGGACAAAAGCTTTAAAGCTGCGTCAAGCAGCAAGTCTTCTGGGACTAGTGAGAACAATGGCCTCGTAAAGAGGGAACCAGATTTGCCAGTGCCTGAAGCGGTCCAGGATGTGGCCCACGGGCTCTATGAGAATGATGTCTTCAATGCTGACCAGGAGAGCATGGAATATGGCTGGAAGGCATAA 2184 44.28 MDPNNTMNSSLSVWASSLIIDSLSTDGNLLLSGGPQSWRSASTNMESYLSLPSSPMSFSSHNLSISGSSGIDIVNATSQPPSQTHYLSLLTGIKQEPDNSTQMPKKPRLEVQEEDFLHQQIIQQLLQRKDSLQLQGHNPHLQAWIQQHKMRNQQHQKILQSIQQLQGVDMQQQQQQMRNQLQQQGTHEVSAMRPSDSGICSRRLMQYMYHQRHRPPDNAISYWRKFVAEYYSPCAKKRWCLSLYDNVGHHAKGVFPQSAMDTWQCDICGSRSGRGFEAIFEVLPQLIKINFESGVIDELLFVDLPHESRFSSGLMMLEYGKAVQESVYEQLRVVREGQLRIIFTHDLKILSWEFCTRHHEELLPRQLVAPQVNQLVHAAQKYQTTMNGSKSDGFCAQDLLVNCNRFLRAGHQLARNLELQLVDELGFSKRYVRCLQIAEVVDSMKDLMIFVRDSNIGPIESLKNYPREATTVKIKKKQLHHGEQPESGQDSPSNRASNLRDISSGLMTGSEEGALALTTRYQKMMRQSSLNSNSSTVKQEPCLFNSSIPGASSLPVQRPKSSSPGLIQIPPPVNSSSSIHSSQGSQNTQHCMIQKLLQEMMNNNRAKGLHNSNGGEEEVLCGINTSTIGGLPKKARGTSVVRNELGCRDSTAAVASPANVLGSFVGRDKSFKAASSSKSSGTSENNGLVKREPDLPVPEAVQDVAHGLYENDVFNADQESMEYGWKA* 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3857080 3867232 - Vvi2g397 Vvi2g397 783096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g397 727 MobiDBLite consensus disorder prediction 485 505 - -
Vvi2g397 727 PANTHER LIM DOMAIN-BINDING PROTEIN 18 71 IPR029005 -
Vvi2g397 727 PANTHER LIM DOMAIN-BINDING PROTEIN 74 726 IPR029005 -
Vvi2g397 727 MobiDBLite consensus disorder prediction 474 505 - -
Vvi2g397 727 PANTHER TRANSCRIPTIONAL REGULATOR SLK3-RELATED 74 726 - -
Vvi2g397 727 PANTHER TRANSCRIPTIONAL REGULATOR SLK3-RELATED 18 71 - -
Vvi2g397 727 MobiDBLite consensus disorder prediction 673 687 - -
Vvi2g397 727 Pfam LIM-domain binding protein 203 463 IPR029005 -
Vvi2g397 727 MobiDBLite consensus disorder prediction 526 588 - -
Vvi2g397 727 MobiDBLite consensus disorder prediction 673 696 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g397 Vvi16g602 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g397 - - vvi:100254797 1285.01