Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g4 ATGCCTCAAGAGGAAGACAATTTCGATTCCCAGGTTCTGGGTTCTTCGTTCTCGCTCTCGCTTCCTTCTGAGCCTCCTGACATCAGAAACTGGTTCTCAAGTTATGAATATGAATCCCCAGCATCGGATACTCTCAATGATTTCGGGTGCTCTTCTTTTAAGGGAAGCCAGTGTGAGAAAGAGGAGCTTGATACTGAAGAGAGCAACAGAGTCAAGGATGAGAATTTGGGGGAATTCATGAACACTGAACTCATAGATGAATTGGCTTCTGGTGAGAAGACAGGTCCAAATGCATTTGTTGAATGCAAAAGAGATGATAAGCTTGAAAACCCCTATGTGAATGAGAGGAATCATGATAATGAAGGGAATAAAGACCGGTATGGTTGGAATGATTTGTGCTCCGGCAAGATAAGTGATCAAGGCTGGGCTGATAGCACACTTAGGAATAATGAAGATTCTTTGCCAGAGTTGGAAGGGAAATTCTCTCTGAAATGCTCGAAAACTAACAAAGGTATTGGCAAGAATGGCAGAAGATCTCCAATAAAGTTGGTTCAAAGGAAGGGTTTCATCCAAAGGAACTCAGAAGCTAACTCCCCAACTAAAGGAGTTGGTCCTGTATCATCTGAATGTGCTTCAGACAGGATTGTAGTTAATGGGGATTCTAGGAAAAAGACAAGCCTGGTGAGCAATGACAAGGAGAATGGTGGAAAAGAATTAGCAGAAAATGGTTTTGTTTCTACCAGGAAAAACAGATGCAGAGGAGAGAATGATCATAACCATCTTAATAAGCCACAAGAATTTCAGTTGGTGAGTTCGAGAAATACAGGGATGGTTTTGTCAACTGGTGAAAAGAATGTTGGGGAAAGGAGGAAGGTATTGTCAGAAAAAACCAATCTTCAACACTCAGATGTTACAGAGATAGCTGGAAAATGGAAGTGTCCCCAGAAAAGCAAGCCAGATCTTGGACCACCATTGAAGCAGCTTCGACTTGAGCAATGGAATCGTGAAAATTCGCAGACCCTCGGTGTCTGCAGCTGCAATAATCAAATGGGTGTGTTCGCTATATCTCTCTATCACCACTGCCGCAGAAATTTCTCATTCAACTACCATTACCAGAGTTGTAGAACTCTCATATTGCAGTCTGCTTTTGAATCAGTTAGAGTCCAGAGACTTTCCCACGACGATTCTGGTATTGTTGAGGTTCACTTGGATCGGCCTGAAGCCAAGAATGCCATTGGGAAGGAGATGCTGGGAGGTTTGCAAAACATTTTTGAAGCTATTAACAGAGACGCGTCTGCTAATGTTGTCATGCTAAGTAGTTCAGTTCCCAGGGTATTCTGTGCAGGTGCTGATTTGAAGGAACGCAAAACAATGAATCCTTCTGAGACTCGGTTTTTTGTCAACTCATTGCGCTCCACATTCTCATTATTAGAGGCACTCCATGTTCCTACTATTGCTGTTATTGAAGGAGCAGCACTGGGTGGTGGGCTAGAAATGGCTCTATCATGTGATCTTCGGATTTGTGGAGAAGATGCGGTATTGGGCTTACCAGAAACAGGACTTGCTATAATTCCTGGGGCTGGTGGAACTCAAAGACTTTCAAGATTGGTTGGAAAATCAATTGCAAAGGAACTCATATTCACTGGTCGGAAAGTTGGTGGCAGGGATGCAATGTCAGTAGGATTAGTCAATTACTGTGTTCCTGCTGGTGAAGCTCATTTGAAGGCACTTGAAATTGCTCAGCATATAAATCAGAAGGGTCCATTAGCATTGCAGATGGCAAAACGAGCTATCAATGAGGGGCTCGAGTTAGATATGGAATCAGCTTTGGCATTGGAAGAAGAGTGTTATGAACAACTTCTGAACACAAAAGATCGCTTAGAAGGTTTGGCAGCCTTTTCCGAGAAGCGGAAGCCCAGATATAATGGTGAATAA 1935 43.0 MPQEEDNFDSQVLGSSFSLSLPSEPPDIRNWFSSYEYESPASDTLNDFGCSSFKGSQCEKEELDTEESNRVKDENLGEFMNTELIDELASGEKTGPNAFVECKRDDKLENPYVNERNHDNEGNKDRYGWNDLCSGKISDQGWADSTLRNNEDSLPELEGKFSLKCSKTNKGIGKNGRRSPIKLVQRKGFIQRNSEANSPTKGVGPVSSECASDRIVVNGDSRKKTSLVSNDKENGGKELAENGFVSTRKNRCRGENDHNHLNKPQEFQLVSSRNTGMVLSTGEKNVGERRKVLSEKTNLQHSDVTEIAGKWKCPQKSKPDLGPPLKQLRLEQWNRENSQTLGVCSCNNQMGVFAISLYHHCRRNFSFNYHYQSCRTLILQSAFESVRVQRLSHDDSGIVEVHLDRPEAKNAIGKEMLGGLQNIFEAINRDASANVVMLSSSVPRVFCAGADLKERKTMNPSETRFFVNSLRSTFSLLEALHVPTIAVIEGAALGGGLEMALSCDLRICGEDAVLGLPETGLAIIPGAGGTQRLSRLVGKSIAKELIFTGRKVGGRDAMSVGLVNYCVPAGEAHLKALEIAQHINQKGPLALQMAKRAINEGLELDMESALALEEECYEQLLNTKDRLEGLAAFSEKRKPRYNGE* 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 94934 103571 + Vvi2g4 Vvi2g4 782703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g4 644 PANTHER FI23914P1-RELATED 371 641 - -
Vvi2g4 644 Pfam Enoyl-CoA hydratase/isomerase 395 643 IPR001753 GO:0003824
Vvi2g4 644 SUPERFAMILY ClpP/crotonase 383 643 IPR029045 -
Vvi2g4 644 Gene3D - 586 644 IPR014748 -
Vvi2g4 644 Gene3D - 380 585 - -
Vvi2g4 644 MobiDBLite consensus disorder prediction 1 25 - -
Vvi2g4 644 ProSitePatterns Enoyl-CoA hydratase/isomerase signature. 485 505 IPR018376 GO:0003824
Vvi2g4 644 Coils Coil 617 637 - -
Vvi2g4 644 CDD crotonase-like 390 583 - -
Vvi2g4 644 MobiDBLite consensus disorder prediction 1 23 - -
Vvi2g4 644 PANTHER ENOYL-COA HYDRATASE-RELATED 371 641 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g4 K05607 AUH; methylglutaconyl-CoA hydratase [EC:4.2.1.18] - vvi:104881023 674.855
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g4 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0648 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007609 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 0 1 1 1 1 1 1 0 1 2 1 35