Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g40 ATGGGGTACATGAGTAATCAACCGCAGTTGTTGTCCAAGATCGCAACCGACAATGGCCATGGCGAAAATTCTCCTTATTTTGATGGGTGGAAGGCATATGATAGCGATCCATATCATCCTATCGAAAACCCTGGGGGGGTTATCCAGATGGGTCTTGCAGAAAACCAGCTTTCCTTTGATATAATTGAAGAGTGGCTTCTGAAGAACCCAAAAGCTTCCATTTGTACTGTGGAAGGAATGAGCGAATTCAGGGATGTTGCTATCTTTCAGGACTATCATGGCCTAAAAGAGTTCAGAAATGCTGTGGCCAAGTTTATGGGAAAAGTGAGAGGAGATAGAGTCGTATTCGATCCCGACCGCATTGTAATGAGCGGTGGAGCCACCGGCGCTCATGAGCTGGTCACCTTCTGCTTGGCTGATCCTGGTGATGCATTCCTGGTCCCCACGCCTTACTACCCAGGATTTGATAGAGACTTGAGGTGGAGAACAGGAGTGCAACTCCTTCCAGTTGTTTGCGAAAGCTCTAACGATTTCAAGATTACCAGAGAAGCATTGGAAGCGGCATATGAGAAAGCCCAAGAGGACAACACCAAAGTGAAAGGCTTGCTCATAACCAATCCATCAAACCCGTTGGGGACAGTTCTGGACAGGGAGACACTGAAAAGTCTAGTGAGCTTCGTCAATGAAAAAAACATCCACCTCATCAGTGACGAAATATACGCTGCCACCGTCTTCAGCTCACCCGGCTTCATTAGCGTCTCAGAGATAATAGATGAAATGGAATGCAACCCTGACCTCATCCACATCGTCTATAGTCTCTCCAAGGACATGGGCTTTCCTGGATTTAGAGTCGGCATTGTGTATTCATACAACGATGATGTAGTGAACATCGGCCGCAAGATGTCGAGCTTCGGACTGGTTTCCTCACAGACCCAACACCTAATCGCATCAATGCTATCAGATGATGAGTTTGTTGAGAGCTTCATTACCAAGAACTCAGAGAAGCTGGCCACAAGGTATAAGACCTTCTCTAGGGGACTATCCCAAGTGGGCATTGGCTGTCTTAAGAGCAATGCGGGTCTCTTTTTCTGGATGGACTTGCGTAGACTCCTCAAGGAGCCGACAGTTGAGGCTGAGATGGCACTGTGGCGTCTGATAATCAATGAAGTCAAGCTCAATGTTTCACCTGGCTCATCCTTCCATTGCTCGGAGCCTGGCTGGTTTAGGGTCTGCTTTGCAAACATGGATGATGAAACCATGGAAGTGGCCCTACGAAGGATCCGGAACTTTGTGCTTAAAGCCAAAGAAAAGGAGGTGTCTGCCAAGAGACAGCGTTGGCAAAACAATCTCAAAGTCCGCTTATCATTCAGAGGATTGGATGAGCCGCACTTGATGTCCCCCCACTCTCCTATTCCTCAATCACCCCTTGTCCGAGCAAGGACTTGA 1446 47.79 MGYMSNQPQLLSKIATDNGHGENSPYFDGWKAYDSDPYHPIENPGGVIQMGLAENQLSFDIIEEWLLKNPKASICTVEGMSEFRDVAIFQDYHGLKEFRNAVAKFMGKVRGDRVVFDPDRIVMSGGATGAHELVTFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLLPVVCESSNDFKITREALEAAYEKAQEDNTKVKGLLITNPSNPLGTVLDRETLKSLVSFVNEKNIHLISDEIYAATVFSSPGFISVSEIIDEMECNPDLIHIVYSLSKDMGFPGFRVGIVYSYNDDVVNIGRKMSSFGLVSSQTQHLIASMLSDDEFVESFITKNSEKLATRYKTFSRGLSQVGIGCLKSNAGLFFWMDLRRLLKEPTVEAEMALWRLIINEVKLNVSPGSSFHCSEPGWFRVCFANMDDETMEVALRRIRNFVLKAKEKEVSAKRQRWQNNLKVRLSFRGLDEPHLMSPHSPIPQSPLVRART* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 470206 475234 - Vvi2g40 Vvi2g40 782739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g40 481 Coils Coil 175 202 - -
Vvi2g40 481 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 3 442 - -
Vvi2g40 481 Pfam Aminotransferase class I and II 48 427 IPR004839 GO:0009058|GO:0030170
Vvi2g40 481 SUPERFAMILY PLP-dependent transferases 20 431 IPR015424 -
Vvi2g40 481 CDD AAT_like 89 428 - -
Vvi2g40 481 Gene3D - 70 321 IPR015421 GO:0003824
Vvi2g40 481 Gene3D Aspartate Aminotransferase, domain 1 36 426 IPR015422 GO:0003824
Vvi2g40 481 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 3 442 - -
Vvi2g40 481 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 272 285 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vvi2g40 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 50 76 - -
Vvi2g40 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 83 99 - -
Vvi2g40 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 120 140 - -
Vvi2g40 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 142 163 - -
Vvi2g40 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 196 220 - -
Vvi2g40 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 232 255 - -
Vvi2g40 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 266 290 - -
Vvi2g40 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 298 321 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g40 K20772 ACS1_2_6; 1-aminocyclopropane-1-carboxylate synthase 1/2/6 [EC:4.4.1.14] - vvi:100263876 974.926
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g40 Vvi15g836 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g40 Blo02g01120 Blo03g00222 Bda06g00119 . . Bpe07g00098 . . . Cmo16g00632 . . . . . Cpe14g00493 . . . . . . . . Cla07g00752 Cam07g0805 Cec07g0867 Cco07g0843 Clacu07g0787 Cmu07g0794 Cre07g1146 . . . Cone9ag0808 . . . Cme07g01616 . . . . . . . Bma12g00069 . . . . Cma16g00582 . . . . . . . . . . . . . . . . . . . Csa04g00609 Chy07g01202 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001626 1 2 3 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 5 2 2 71