Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g400 ATGTGTCAGTTACCTTCATCTGCTGTCGCTTATAAGTTCCGTTCAGACCAAACTGGGTTGTTGTCTGCCGTAGAACAGGAACCCCACATGCTCACTCCTTTGGTCCCCAAGGCCCCAACACTTGATGATCAGCCTCATGGACAAGAACAAAACCCCAGTAAAACCCACCTCTCTCTTGCGCTTACAGAAGCCAGACACATAGCCAGTATAGCTTTTCCCATGATATTAACGGGTCTTTTACTCTACTCCCGTTCCATGATTTCCATGCTCTTCCTCGGTCGCCTAGGGGAGCTTGCCCTAGCAGGCGGTTCACTCGCGATTGGATTCGCTAACATCACCGGATATTCTATTCTCTCTGGCCTTGCTATGGGAATGGAACCAATTTGTGGGCAAGCTTTTGGAGCTCAGAGATATAAGCTTCTTGGCCTCACCTTGCAGAGAACGGTGCTTTTGCTTCTTTTAACGTCAATTCCTATAGCTTTTCTATGGTTTAACATGAAGGAAATTCTGCTCTTCTGTGGTCAAGATGAAGATATTGCCACCGAAGCTCAATCCTACATTCTTTATTCTCTTCCTGACCTTGTCGCACAGTCGTTTCTCCACCCTCTGCGTATCTATCTTCGAACCCAGTCCATAACACTGCCCCTAACCTACTGTGCAACTCTCGCAATTCTTCTCCACATCCCCATCAATTACTTTCTCGTTTCAGTGCTTGATCTCGGAATCAAAGGCGTTGCTCTAAGCGGAATTTGGACAAACCTCAACCTCGTAGGATCCTTGATAGCCTACGTTGTAGTATCGAGAGTTTACAAGAAAACTTGGGGAGAATGGTGGTGGTACGAAATCATGATCTTGCTATGTGGGCTATTACTCAATCCTCGAGCAACCGTGGCTTCAATGGGCATTCTGATCCAAACCACAGCTCTCATCTACATTTTCCCGTCTTCTCTCAGCTTCAGCTTATCAACAAGGGTCGGAAACGAACTGGGTGCTAACCGTCCCGAGAAAGCGCGATTGGCTGCAATAGTTGGCCTCTCCTCTAGCTTCATATTGGGATTTCTGGCACTGTTTTTCGCTGTAATGGTCAGGAAAACATGGGCCACCATGTTCACTCAAGACCCCGAGATTCTCACATTAACATCAATGGTCCTACCTATAATTGGACTATGCGAGCTCGGAAACTGCCCACAAACAACAGGCTGTGGTGCCCTCAGAGGCACAGCTCGGCCTAAATTGGGAGCCAACATCAACCTAGGCTGCTTCTATCTAGTGGGCATGCCAGTTGCAGTATGGCTAGGTTTCTTCGCAGGGTTCGACTTCAAAGGCCTATGGCTGGGTCTGCTGGCCGCGCAGGGCTCATGCGCAGTGACAATGTTGTTTGTTCTGTTTCAGACCAATTGGGACCAACAAGCCCAGAGAGCCAAGGAGCTGACTGGAACCGGCTCTGATGACGATGAAGAGAGTGTGACATTGAAGGATGAAACCACCCAGGACTCCACGAATTCGTTAGTGTAA 1515 48.32 MCQLPSSAVAYKFRSDQTGLLSAVEQEPHMLTPLVPKAPTLDDQPHGQEQNPSKTHLSLALTEARHIASIAFPMILTGLLLYSRSMISMLFLGRLGELALAGGSLAIGFANITGYSILSGLAMGMEPICGQAFGAQRYKLLGLTLQRTVLLLLLTSIPIAFLWFNMKEILLFCGQDEDIATEAQSYILYSLPDLVAQSFLHPLRIYLRTQSITLPLTYCATLAILLHIPINYFLVSVLDLGIKGVALSGIWTNLNLVGSLIAYVVVSRVYKKTWGEWWWYEIMILLCGLLLNPRATVASMGILIQTTALIYIFPSSLSFSLSTRVGNELGANRPEKARLAAIVGLSSSFILGFLALFFAVMVRKTWATMFTQDPEILTLTSMVLPIIGLCELGNCPQTTGCGALRGTARPKLGANINLGCFYLVGMPVAVWLGFFAGFDFKGLWLGLLAAQGSCAVTMLFVLFQTNWDQQAQRAKELTGTGSDDDEESVTLKDETTQDSTNSLV* 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3894150 3895743 - Vvi2g400 Vvi2g400 783099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g400 504 Pfam MatE 276 431 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi2g400 504 Pfam MatE 73 233 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi2g400 504 PANTHER PROTEIN DETOXIFICATION 276 486 - -
Vvi2g400 504 PANTHER PROTEIN DETOXIFICATION 48 275 - -
Vvi2g400 504 MobiDBLite consensus disorder prediction 474 504 - -
Vvi2g400 504 PANTHER MULTIDRUG RESISTANCE PROTEIN 276 486 - -
Vvi2g400 504 PANTHER MULTIDRUG RESISTANCE PROTEIN 48 275 - -
Vvi2g400 504 MobiDBLite consensus disorder prediction 34 55 - -
Vvi2g400 504 CDD MATE_eukaryotic 63 473 IPR045069 GO:0042910|GO:1990961
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g400 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - vvi:100265094 939.102
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g400 Vvi16g598 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g400 . . . . . . . . . . Cma02g01482 Cma15g01199 Car02g01242 Car15g01086 . . Cpe05g00307 . . . . . . . . . . . . . . Cone8ag0330 . Cone6ag0749 Cone9ag0752 . Csa05g00322 . . Blo03g00373 . . . . Bpe11g00685 . . . Cmo02g01521 Cmo15g01264 . . . . . Cpe13g00176 Bhi12g00205 . . Lac11g2136 Hepe06g1582 . Lcy12g1700 Cla01g00299 Cam01g0311 Cec01g0302 Cco01g0318 Clacu01g0311 Cmu01g0296 Cre09g2212 Lsi09g00305 . . Cme09g01720
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001123 3 2 4 5 4 2 4 2 2 1 2 2 2 2 2 4 2 7 4 2 2 2 2 1 2 2 2 4 2 2 79