Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g402 ATGGAATTAAAACTGTTCGACACGCCAGAGAGTTCTTCAGCGTCGGACTGGCAGACCCGGAGGACCATCCAATCCGACGAGGAAGTTCTGCTGGCGTCGGATCGGCCTAAGAAGCGCGCCGGTAGGAGGAAGTTTAAGGAGACACGGCACCCGGTGTACAGGGGAGTGAGGAGGAGGAACGGGAACAAGTGGGTGTGCGAGCTGCGGGAGCCCAATAAGAAGTCGAGAATATGGCTGGGGACGTATCCAACTGCTGAGATGGCTGCCCGGGCGCATGATGTTGCTGCATTAGCGTTTAGGGGCCGGAAGGCCTGTTTGAATTTTGCTGACTCTGCGTGGAGTTTGCCCGTGCCAGTTTCGAAGGACTCCATGGAGATTAGGAGGGCAGCAGCTGCAGCAGCAGAGGCGTTCCGGCCTCAGGAGTTTCAAGACCATTCAAGTGGAGACGCAAGGAAGGAAAGTGTGGAGGCTGCTGAATCATTGATTTTTGATACAGCAGGGTTGCTTATCACCATGGCTGAAGAGCCCCTACATTCTCCTCCTCCTTGTTTGGGGGACGGTTTCATGTGGGAGGATGTTGAACTTGACGCTGATATGTCACTATGGAGTTACTCAATTTGA 621 54.11 MELKLFDTPESSSASDWQTRRTIQSDEEVLLASDRPKKRAGRRKFKETRHPVYRGVRRRNGNKWVCELREPNKKSRIWLGTYPTAEMAARAHDVAALAFRGRKACLNFADSAWSLPVPVSKDSMEIRRAAAAAAEAFRPQEFQDHSSGDARKESVEAAESLIFDTAGLLITMAEEPLHSPPPCLGDGFMWEDVELDADMSLWSYSI* 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3923540 3929358 + Vvi2g402 Vvi2g402 783101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g402 206 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Vvi2g402 206 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F 8 206 - -
Vvi2g402 206 MobiDBLite consensus disorder prediction 1 20 - -
Vvi2g402 206 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Vvi2g402 206 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Vvi2g402 206 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677
Vvi2g402 206 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 206 IPR045277 GO:0003700
Vvi2g402 206 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Vvi2g402 206 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Vvi2g402 206 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Vvi2g402 206 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g402 Vvi16g589 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14589 PF00847 AP2 2.20E-14 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g402 - - vvi:100253072 382.489