Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi2g402 | ATGGAATTAAAACTGTTCGACACGCCAGAGAGTTCTTCAGCGTCGGACTGGCAGACCCGGAGGACCATCCAATCCGACGAGGAAGTTCTGCTGGCGTCGGATCGGCCTAAGAAGCGCGCCGGTAGGAGGAAGTTTAAGGAGACACGGCACCCGGTGTACAGGGGAGTGAGGAGGAGGAACGGGAACAAGTGGGTGTGCGAGCTGCGGGAGCCCAATAAGAAGTCGAGAATATGGCTGGGGACGTATCCAACTGCTGAGATGGCTGCCCGGGCGCATGATGTTGCTGCATTAGCGTTTAGGGGCCGGAAGGCCTGTTTGAATTTTGCTGACTCTGCGTGGAGTTTGCCCGTGCCAGTTTCGAAGGACTCCATGGAGATTAGGAGGGCAGCAGCTGCAGCAGCAGAGGCGTTCCGGCCTCAGGAGTTTCAAGACCATTCAAGTGGAGACGCAAGGAAGGAAAGTGTGGAGGCTGCTGAATCATTGATTTTTGATACAGCAGGGTTGCTTATCACCATGGCTGAAGAGCCCCTACATTCTCCTCCTCCTTGTTTGGGGGACGGTTTCATGTGGGAGGATGTTGAACTTGACGCTGATATGTCACTATGGAGTTACTCAATTTGA | 621 | 54.11 | MELKLFDTPESSSASDWQTRRTIQSDEEVLLASDRPKKRAGRRKFKETRHPVYRGVRRRNGNKWVCELREPNKKSRIWLGTYPTAEMAARAHDVAALAFRGRKACLNFADSAWSLPVPVSKDSMEIRRAAAAAAEAFRPQEFQDHSSGDARKESVEAAESLIFDTAGLLITMAEEPLHSPPPCLGDGFMWEDVELDADMSLWSYSI* | 207 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3923540 | 3929358 | + | Vvi2g402 | Vvi2g402 | 783101 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi2g402 | 206 | Pfam | AP2 domain | 51 | 101 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi2g402 | 206 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F | 8 | 206 | - | - | |
Vvi2g402 | 206 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Vvi2g402 | 206 | Gene3D | AP2/ERF domain | 52 | 110 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi2g402 | 206 | ProSiteProfiles | AP2/ERF domain profile. | 52 | 109 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi2g402 | 206 | SUPERFAMILY | DNA-binding domain | 52 | 111 | IPR016177 | GO:0003677 | |
Vvi2g402 | 206 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 8 | 206 | IPR045277 | GO:0003700 | |
Vvi2g402 | 206 | SMART | rav1_2 | 52 | 115 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi2g402 | 206 | PRINTS | Ethylene responsive element binding protein signature | 53 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi2g402 | 206 | PRINTS | Ethylene responsive element binding protein signature | 75 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi2g402 | 206 | CDD | AP2 | 53 | 111 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14589 | PF00847 | AP2 | 2.20E-14 | CL0081 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi2g402 | - | - | vvi:100253072 | 382.489 |