Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g407 ATGTGGTTTTTCATCACCCTGATAGAGAAATTTGAATATTATGTCAAAAATAATGTCGACATGCTTAAAGAAATTATGAAGCGGACTTATGAGAAAGCAGAAGAGTGCATTAGAACAAACTACTATGGAACCCAAAGAGTTACCCAGTCACTTCTTCCTCTCCTGCAACTCTCCCCTTCATCAAGAATAGTGAATGTCTCTTCCCTTCGTGGACAGCTAAAGAATATCCACAACCATCAAGTTAAAGCAGAGCTGGAGAATGTTGGGGAACTAACAGAAGAAAAACTAGACAAGATCTTGCAAAGGTTTTTAAGAGATTTCAAGGAGGATAAGCTGGGGGCCAATGGGTGGCCTGTTATTGCATCTGCATACAAGGTATCCAAAGCTGCTGTAAATGCCTATACCAGAATCATAGCAAGGAAATTCCCCCATTTTCTTGTAAATTATGTGCACCCAGGATTGGTTAAAACGGATAGTACATGCAATACAGGGGAAATGACTGCTGAGGAGGGTGGCAGAGCTCCTGTGAAGTTGGCTTTGCTGCCTGATGGTAGTCCTTCAGGCCTCTATTTCCATGAGATGGATGAGATTGTTTTTGTGACAAATTCATCATTTGACACCAAACAAATGCACATGAATGGAATAACTCTTCCTTCCCCAATTAATATTGTTGTTGCAAACAATGTTTGA 690 40.43 MWFFITLIEKFEYYVKNNVDMLKEIMKRTYEKAEECIRTNYYGTQRVTQSLLPLLQLSPSSRIVNVSSLRGQLKNIHNHQVKAELENVGELTEEKLDKILQRFLRDFKEDKLGANGWPVIASAYKVSKAAVNAYTRIIARKFPHFLVNYVHPGLVKTDSTCNTGEMTAEEGGRAPVKLALLPDGSPSGLYFHEMDEIVFVTNSSFDTKQMHMNGITLPSPINIVVANNV* 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4017701 4020569 + Vvi2g407 Vvi2g407 783106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g407 229 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 22 186 IPR036291 -
Vvi2g407 229 PRINTS Glucose/ribitol dehydrogenase family signature 55 71 IPR002347 -
Vvi2g407 229 PRINTS Glucose/ribitol dehydrogenase family signature 124 143 IPR002347 -
Vvi2g407 229 PRINTS Glucose/ribitol dehydrogenase family signature 143 160 IPR002347 -
Vvi2g407 229 Coils Coil 82 102 - -
Vvi2g407 229 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 16 195 - -
Vvi2g407 229 Gene3D - 5 199 - -
Vvi2g407 229 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 16 195 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g407 K15095 E1.1.1.208; (+)-neomenthol dehydrogenase [EC:1.1.1.208] - vvi:100266765 355.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g407 Vvi15g940 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g407 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0070020 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1