Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g409 ATGGACAATGACTTCCTTGAAGAGCAGCAAGTGCCATCTGGCCTCCTAATTGGCATAAAATTTGATGTTTCAACTGAGGAAGATATGGAGAAGATATCTGTTATGAAAATTGATGCAGTCAATGAAATAACTGATCCTAAGTTGGGAGTTCCGAATCCTTCTTGTCAGTGCTCTACGTGTGGCGCCAAAGATACAAAAAAGTGTGAAGGTCACTTTGGGGTTATCAAATTTCCGTTCACAATACTCCATCCATATTTTTTAACAGAAGTTGTCCAGATTTTGAATAAAATTTGCCCAGGATGTAAATCCACTCGGCAAGGTCAATGGGTCAAGGTCAGACGTCTTCGTTCCAAGGGATGCAAATATTGTGCTGCAAATTCAAATGATTGGTATCCAACAATGAAATTTAAGGTTTCCTCCAAAGACTTGTTCAGAAAGACAGCAATTATAGTAGAAATGAATGAAAAGCTCCCAAAGAAGTTACAAAAGAAAAGTTTCAGACCAGTATTGCCTCTTGATTATTGGGATTTTATTCCAAAAGATCCACAACAAGAAGAGAATTGTCTGAACCCAAACAGAAGGGTTCTTTCACATGCTCAGGTTCATTATTTGTTGAAAGATATTGACCCAGGATTTATCAAGGAGTTTGTTTCAAGGATGGATTCATTTTTCCTTAACTGTTTACCTGTAACGCCCAATAATCATCGTGTGACGGAAATAACGCACGCTTTGTCCAATGGACAGACATTGATCTTTGATCAGCACAGCAGGGCCTACAAAAAGCTGGTTGATTTCAGAGGAACAGCCAATGAATTGAGTTGCCATTCTGCTTCTAAAATGTCTGGTTTGAAATGGATCAAAGAAGTCCTTCTTGGGAAGCGAACCAACCATTCATTCCGGATGATTGTAGTTGGTGATCCAAAACTTAGACTAAGCGAAATTGGTATACCATGCCACATTGCAGAAGAGTTGCTAATATCTGAGCACTTGAACTCATGGAACTGGGAAAAAGTGACTAATGGCTGTAATTTACGTCTACTTGAAAAGGGCCAAACTTATGTCCGCAGGAAAGGTACTCTGGCTCCTGTACGTCGTATGAATGACTTCCAAGCAGGTGATATTATATATAGGCCTCTTACTGATGGGGATATTGTATTGATAAATAGGCCTCCATCAATTCATCAACACTCGGTTATTGCTTTATCTGTCAAGGTCCTTCCTTTAAACTCAGTTGTTTCTATAAACCCGCTTTGTTGTTCACCTTTTCGCGGGGATTTTGATGGCGACTGTCTTCATGGTTATATTCCTCAGTCAGTTGACTCCAGAGTTGAGCTCAGTGAGCTTGTTGCTTTGAACAGGCAGTTAATTAATAGGCAAAGTGGTAGAAATCTGCTTTCACTAAGTCAAGATAGTTTAAGCGCTGCTCATTTGGTCATGGAGGATGGGGTTCTATTGAACCTATTCCAAATGCAGCAGCTGGAAATGTTCTGCCCTTATCAATTGCAATCACCAGCCATCATCAAAGCACCATTACTTGACACTCAATGGTTGTCAATGAGGGGCTTGTCTGTTTCATTGTCTGACATTTACCTCTCATCTGATTCAATCTCACGGAAGAATATGATTGATGAAGTCTTTTGTGGATTACTAGTAGCAGAGCAGACATGTCATTTCAAACAGTTGCTTGTTGATTCTAGTCAGAATTTTCTCATTGGAAGTGGTGAAAATAATCAGAATGGGGTGGTTCCTGATGTGCAGAGTTTGTGGTATGAAAGACAGGGATCAGCTGCACTTTGTCAATCTTCTGTTTGTGCTTTTAAGCAAAAGTTTCGGGATATACAGAATCTAGTCTACCAATATGCAAATAAGGATAATTCACTGCTAGCTATGTTAAAGGCTGGAAGCAAGGGTAATTTGCTGAAATTAGTTCAGCAAGGTTTGTGTCTTGGTTTGCAACATTCATTGGTTCCTTTATCTTTTAAAATTCCCCACCAGCTCTCATGTGCAGCATGGAATAAACAGAAGGTGCCTGGTTTAATCCAGAATGATACTTCTGAATATGCTGAGTCTTACATTCCATATGCTGTCGTTGAAAATTCTTTTCTTATGGGCTTGAATCCGCTTGAATGTTTTGTTCACTCGGTGACAAGTCGAGATAGTTCCTTCAGTGATAATGCTGATCTTCCTGGTACTTTGACCCGAAGGCTTATGTTTTTCATGCGTGATTTATACATTGCATACGATGGGACGGTAAGAAATGCTTATGGGAATCAACTTGTTCAGTTCTCTTACAATATTGAGCACACATCTACCCCAAGTGATGGCATTAATGAGGACACTTGTGCCTATGATATGGGTGGCCAACCTGTTGGTTCAATATCAGCTTGTGCAATTTCTGAAGCTGCATACAGTGCTTTAGATCAACCAATTAGTCTGCTTGAACCATCACCGCTGCTGAATCTAAAGCGGGTACTAGAGTGTGGTTTGAGAAAAAGTACTGCTGACCGAACTGTGTCATTATTTTTGTCCAAGAAACTTGAAAAGCGGAAACATGGCTTTGAGTATGGAGCCTTAGAGGTTAAGAACCATTTGGAGAAATTACTCTTTTCAGACATCGTGTCTACAGTCATGATAGTCTTCTCCCCACAAAATGGTAGCAAGACACATTTCAGTCCATGGGTTTGCCATTTTCATGTATGCGAGGAAATTGCAAAAAAGAGAAGCCTAAAACCGCACTCGATTATCGATGCTCTTTACATGAAATGTAATTCCGCTAGAGCAGAATCAAAGATTAATCTTCCTGATTTGCAGATAACAAGCAAGGATTGCTTTGTTGACATGGAGAAGGAAGATAGCGATTGTTTTTGCATCACAGTCAGCATTGTGAATTCAAAAAAGTCCTGCATACAATTGGATACTGTTCGGGACTTGGTGATACCGTTCCTTCTTGGAGCTGTGGTAAAAGGTTGTTGCATTAAAAATTCAGATGTGTTGAAGTCCTCTTCTGGCAGACTCTATTTGAGGGTATATGTTTCAGGAGATTGTGGCAAAAAAAATTTCTGGGGTGTACTCATGGATGCTTGCCTCCAGATAATGGATATGATTGATTGGGAGCGCAGTCATCCGGACAATATACATGATATTTTTGTAGTCTATGGAATTGATGCTGGGTGGAAATACTTTCTCAATAGTTTGAAGTCTGCTATATCTGATATAGGCAAGACTGTACTCCCAGAGCATCTCCTTCTTGTTGCAAGTTGTCTTTCTGCTACTGGAGAATTTGTTGGCTTAAATGCAAAAGGAATGGCACGGCAAAAAGAACTCACATCTATCTCATCACCCTTTATGCAAGGATGCTTTTCTAGTCCTGGTTCTTGCTTCATCAAAGCTGGTAAGCGAGCAGTTGCTGATAATCTCCATGGTAGTCTAGATGCATTAGCATGGGGCAAGATTCCTTCTGTAGGAAGTGGTGGACACTTCGATATTTTATATTCTGCAAAGGGGCATGAGCTTGCTAGACCTGAAGATATATATAAGCTGTTAGGTAGCCAAACTAGTTGTCATGAGCAGAATCTAAAGGTCAAGGTACCTATCACTTGCTACCAGACAACCACTAAATGTGGGGCTCAGCTTGTATATGCAAATGGTGATTCTGCCTCAAAAGGATGCAAGAGTTTGGAAAAAATATCAAAATCAGTCTTAAGAAGTTTCTTATCGTTAAATGATATTCAGAAGCTGTCTCGTAGGTTGAAGTTTATATTACAGAAGTATCCTATTAATCATCAGTTAAGTGAAATTGACAAGACTACCTTGATGATGGCTCTTTATTTTCACCCTCGAAGAGATGAGAAGATTGGTCCTGGAGCTCAGAACATAAAGGTTCGCTATCATTCTAAATATCACAATACTCGATGCTTTTCACTGGTAAGAACGGATGGCACAGAAGAAGATTTTTCCTATCACAAGTGCGTCCACGGTGCTCTGGAAATAATTGACCCTCGGAGGGCAAGGAGCTATCAGTCAAGATGGTTGCCATACAGTGAGGTATTAAATTTGTACAGAACACTCATTAATCGTTGA 4080 40.0 MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKVRRLRSKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELSCHSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLDTQWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDMGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSKDCFVDMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGCCIKNSDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHGALEIIDPRRARSYQSRWLPYSEVLNLYRTLINR* 1360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4035664 4081274 + Vvi2g409 Vvi2g409 783108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g409 1359 CDD RNAP_IV_RPD1_N 24 752 IPR040403 -
Vvi2g409 1359 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 515 1238 - -
Vvi2g409 1359 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 1 510 - -
Vvi2g409 1359 PANTHER DNA-DIRECTED RNA POLYMERASE 1 510 IPR045867 GO:0003899|GO:0006351
Vvi2g409 1359 PANTHER DNA-DIRECTED RNA POLYMERASE 515 1238 IPR045867 GO:0003899|GO:0006351
Vvi2g409 1359 Pfam RNA polymerase Rpb1, domain 1 20 236 IPR007080 GO:0003677|GO:0003899|GO:0006351
Vvi2g409 1359 Gene3D RNA polymerase ii 325 377 - -
Vvi2g409 1359 Pfam RNA polymerase Rpb1, domain 2 292 449 IPR000722 GO:0003677|GO:0003899|GO:0006351
Vvi2g409 1359 Pfam RNA polymerase Rpb1, domain 4 603 654 IPR007083 GO:0003677|GO:0003899|GO:0006351
Vvi2g409 1359 Gene3D - 286 458 - -
Vvi2g409 1359 Pfam RNA polymerase Rpb1, domain 5 1022 1107 IPR007081 GO:0003677|GO:0003899|GO:0006351
Vvi2g409 1359 SMART rpolaneu7 221 479 IPR006592 GO:0003677|GO:0003899|GO:0006351
Vvi2g409 1359 Gene3D - 1234 1327 - -
Vvi2g409 1359 Gene3D - 583 705 IPR038120 -
Vvi2g409 1359 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 16 1165 - -
Vvi2g409 1359 Gene3D RNA polymerase Rpb1, domain 3 459 517 IPR042102 -
Vvi2g409 1359 CDD RNAP_IV_NRPD1_C 787 1164 IPR040402 -
Vvi2g409 1359 Pfam Protein of unknown function (DUF3223) 1252 1324 - -
Vvi2g409 1359 Gene3D RNA polymerase II, clamp domain 8 123 IPR044893 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g409 K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] - vvi:100254724 1649.41
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g409 . . Bda06g00069 . . Bpe07g00129 . . Cmo06g00731 . . . . . . . . . . . . . . . Cla10g00343 Cam10g0357 Cec10g0371 Cco10g0365 Clacu10g0358 Cmu10g1195 Cre10g0608 . . Cone6ag0744 Cone9ag0748 Lsi07g01394 . . Cme06g02680 . . . . . . . Bma12g00105 . . . . . Car06g00635 . Cpe08g00802 . . . . . . . . . . . . . . . . Csa03g00363 Chy06g01960 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005483 2 9 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 40