Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g41 ATGGTCGCCGCCGCGGCCACCACGGCTGTCGAAGCGGAGCCGCGTTCGAACTCCACGGCTCCCTCCAAATCTTTGCCCTTCCGAGTCGGGCACGGCTTCGATCTTCATCGGTTGGAGCCCGGGTACCCTCTCATCATTGGCGGCATTGATATTCCTCACGATAGAGGCTGCGAGGCTCACTCGGATGGTGATGTGCTGCTTCATTGCGTTGTTGATGCGATTTTGGGTGCTTTGGGGCTTCCTGATATCGGCCAGATTTTCCCGGATTCGGATCCGAAATGGAAGGGAGCTCCATCCTCTGTTTTTATCAAAGAAGCGGTTAGACTTATGCATGAAGCAGGCTATGAGATTGGAAATTTAGATGCCACTTTGATTCTTCAAAGACCCAAACTAAGCCCGCACAAGGAGGCTATCAGGTCGAACTTATCACAACTTCTTGGGGCAGACCCTTCTGTGGTAAATCTGAAAGCTAAAACTCATGAGAAGGTTGACAGCCTTGGGGAAAATCGGAGTATTGCAGCTCACACTGTGGTTCTTCTTATGAGGAAGTAG 552 51.27 MVAAAATTAVEAEPRSNSTAPSKSLPFRVGHGFDLHRLEPGYPLIIGGIDIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRSNLSQLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK* 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 479435 487361 - Vvi2g41 Vvi2g41 782740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g41 183 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC 3 183 IPR003526 GO:0008685|GO:0016114
Vvi2g41 183 SUPERFAMILY IpsF-like 26 182 IPR036571 GO:0008685|GO:0016114
Vvi2g41 183 CDD MECDP_synthase 28 180 IPR003526 GO:0008685|GO:0016114
Vvi2g41 183 TIGRFAM ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 28 182 IPR003526 GO:0008685|GO:0016114
Vvi2g41 183 Pfam YgbB family 27 180 IPR003526 GO:0008685|GO:0016114
Vvi2g41 183 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 27 182 IPR003526 GO:0008685|GO:0016114
Vvi2g41 183 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE 3 183 - -
Vvi2g41 183 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 61 76 IPR020555 GO:0008685
Vvi2g41 183 MobiDBLite consensus disorder prediction 1 23 - -
Vvi2g41 183 Gene3D - 24 183 IPR036571 GO:0008685|GO:0016114
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g41 K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] - vvi:100250076 364.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g41 Blo02g01121 . . Bda08g00505 Bpe05g00658 . . . . . . . . . . . . . . . . . . . Cla07g00750 Cam07g0804 Cec07g0866 Cco07g0841 Clacu07g0784 Cmu07g0792 Cre07g1144 . . Cone6ag0810 Cone9ag0809 . . . Cme07g01615 . . . . . . Bma05g00831 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00610 Chy07g01201 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 33