Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g413 ATGGAAGGCAGAAATCTGCTGCGCTTCCTCTTCTTTCTTGTTACGGGGCTCTTTCTTCTCCTTTTCACCTGGTCAAACTTCCCTTATCTTCCCTCCAACAAGGCTGAGCTTCTCGACTGCACCAGTTTCTCACCATGGTGCACCTCCAAATCCAAACCCCACCTCACAACAAACCCAACCAACCCCACACGAGGCCCCCGCCGCCACCACTCTTCCGATGTCCCCCACCATCCTCTCGACCCCCTCACGGTCCAAGAAATCAACCGCGTCCGTACAATCCTCTCTTCCCACGCGCCGCTCAAAGCATCGAAGAGGTATACGATTCACGCCGTTGACCTGGAGGAGCCGGCGAAGCCACTCGTCCTCCGGTGGAAGAAAGGCAACCCCATGCTGCCACGGAGGGCTTCCGTAATAGCACTTGTGGGGGGGGAGTCGCACTTGTTGACAGTGGACTTGGCCACGAGTCAGGTCACTCGAGACGACGTCCTTCCTCCCTCCGGCTATCCGACGATGACCGTTGAGGACATGACGACGGCCACGAAGGCTCCGCTTGTGGATGGGAATTTCAACCGTACGATCATCGAGCGCGGGATTGATCTGGCGGATCTCGCTTGTTTGCCACTTTCGACGGGGTGGTTTGGGAAAAGTGAGGAGAAGAGGCGGCTGATTAAGCAAGCAAGTGAGCAGCCCAAGGGCCCGATGATAATTTCCCGGGTCATGTTTCGGGACCCGGACACCGGATTGCTGAGGAATGTGATGTACAAAGGCTTAACATCCGAGTTTTTTGTCCCATACATGGACCCAACTGATGCATGGTACTTCAAGACTTACATGGATGCTGGCGAATACGGGTTTGGACTCCAGGCAATGCCCCTTGACCCGCTTAACGATTGTCCGCGAAACGCATACTACATGGATGGTGTGTTCGCTGCAGCTGATGGCACGCCATTCGTACAATCAAATATGATCTGCATCTTTGAGAGCTATGCAGGTGATATCGGATGGCGGCACGCAGAGAGTCCAATTACAGGCATGGGGATCCGAGAGGTGAGACCGAAGGTGACGCTTGTGGTTAGAATGGCAGCATCAGTGGCCAATTATGATTATATTGTGGATTGGGTGTTTCAGACTGATGGCCTCATCCGAATCAAGGTTGGACTTAGTGGCATCCTGATGGTGAAAGGCACCCCTTATGTGAACATGAACCAAGTGCCAGGGCAGGAATATCTCTATGGCACCCTCTTATCAGAAAATGTCATCGGGGTTATCCATGACCACTACCTCACTTTCTATCTGGACATGGACGTGGATGGCTCGGATAATTCATTTGTTAAAGTGAATCTTGAGAAGCAGATGACTGCTAATGGGGAATCGCCAAGGAGGAGCTTCTTAAAGGCTACCAGGAAGGTGGCGAAGACGGAGAAGGACGCACAAATCAAATTCAAACTCTATGAGCCAGCTGAGTTTCATGTCATCAATCCGTCCAAAAAGACACGGGTTGGGAACCCCGTTGGGTACAAGGTGGTTGCCGGTGGAACAGCTGCTAGCTTGCTCGATCATGAAGATCCTCCCCAGAAGCGTGGCGCTTTTACTAACAATCAAATATGGGTCACCCCGTATAATCGGAGTGAGCAATGGGCAGGTGGCTTGTTGGTTAGCCAGAGCCAGGGTGATGACAATCTTGCAGTATGGTCTGATCGGAATAGGCCAATTGAGAACAAGGACATTGTGGTTTGGTATACTTTGGGCTTCCATCACATACCATGTCAAGAGGACTTCCCTGTCATGCCAACAGTTTCCTCAAGCTTCGACCTAAAGCCTGTCAATTTCTTCGAGAGCAATCCCATTCTTCGGATGCCACCTAATGTCGAAAATGATCTTCCAATTTGCAAGCCAGATGCTTCAGCTTAA 1911 51.54 MEGRNLLRFLFFLVTGLFLLLFTWSNFPYLPSNKAELLDCTSFSPWCTSKSKPHLTTNPTNPTRGPRRHHSSDVPHHPLDPLTVQEINRVRTILSSHAPLKASKRYTIHAVDLEEPAKPLVLRWKKGNPMLPRRASVIALVGGESHLLTVDLATSQVTRDDVLPPSGYPTMTVEDMTTATKAPLVDGNFNRTIIERGIDLADLACLPLSTGWFGKSEEKRRLIKQASEQPKGPMIISRVMFRDPDTGLLRNVMYKGLTSEFFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAYYMDGVFAAADGTPFVQSNMICIFESYAGDIGWRHAESPITGMGIREVRPKVTLVVRMAASVANYDYIVDWVFQTDGLIRIKVGLSGILMVKGTPYVNMNQVPGQEYLYGTLLSENVIGVIHDHYLTFYLDMDVDGSDNSFVKVNLEKQMTANGESPRRSFLKATRKVAKTEKDAQIKFKLYEPAEFHVINPSKKTRVGNPVGYKVVAGGTAASLLDHEDPPQKRGAFTNNQIWVTPYNRSEQWAGGLLVSQSQGDDNLAVWSDRNRPIENKDIVVWYTLGFHHIPCQEDFPVMPTVSSSFDLKPVNFFESNPILRMPPNVENDLPICKPDASA* 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4110678 4113795 + Vvi2g413 Vvi2g413 783112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g413 636 MobiDBLite consensus disorder prediction 51 81 - -
Vvi2g413 636 SUPERFAMILY Amine oxidase N-terminal region 167 225 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g413 636 ProSitePatterns Copper amine oxidase topaquinone signature. 356 369 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g413 636 PANTHER COPPER AMINE OXIDASE 7 224 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g413 636 PANTHER COPPER AMINE OXIDASE 232 634 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g413 636 Pfam Copper amine oxidase, N3 domain 169 225 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g413 636 SUPERFAMILY Amine oxidase N-terminal region 75 165 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g413 636 Gene3D - 75 169 - -
Vvi2g413 636 MobiDBLite consensus disorder prediction 51 65 - -
Vvi2g413 636 Pfam Copper amine oxidase, enzyme domain 234 616 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g413 636 Gene3D Copper amine oxidase, catalytic domain 231 627 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g413 636 Gene3D - 170 230 - -
Vvi2g413 636 SUPERFAMILY Amine oxidase catalytic domain 234 626 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g413 636 Pfam Copper amine oxidase, N2 domain 77 160 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g413 636 ProSitePatterns Copper amine oxidase copper-binding site signature. 581 594 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g413 636 PANTHER AMINE OXIDASE-RELATED 232 634 - -
Vvi2g413 636 PANTHER AMINE OXIDASE-RELATED 7 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g413 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - mnt:21406008 857.825
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g413 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0367 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011676 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30