Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g414 ATGCATTCTCCTTGCATTAGGGAGACCTCAGAAGCCTGCTTTCAAGGTTGCTGTCTGGCTTCTTTGCCTGGTTTTCCTGATCCCCATGGCACGGATCCAAAGAATCTCAGCAGTGCTGCTGTATCCAGGTACAATTTTGCTCTCACCACAGTTTCATCTCTCTTCCCAAACACCCAATTCACCAACCATGAATCCCTCCCTCCGTTGGATGAATCGTTTTCTAGCTTCAATAAAGCGTACCCACAATACTCCAACACTAATCAAGCCGATCAGATAAGAGCCCAAGAATACTACCATCTGTCCATGTCCAACCATGTATGTCTTGATTACATTGGCCATGGCCTCTTCTCCTATTCCCAGCTACAAAAACTGCCCTTCTTTGAAATCTCCTACAAGTCAGTAAATTTGAATTCTCAGATACTCTATGGTGGAGAAGAGTCAGAATTGGAATCTAAAATCCGGAAAAGAATTATGGATTTTATGAATATCTCTGAAGCAGACTACTCCATGGTTTTCACTGCCAACCAGTCATCAGCTTTTAAACTTCTAGCAGACTTCTATCCATTCCAGTCTAACCAAAATCTTCTTACGGTCTATGATTATGAGAATGAGGCAGTGGGAGCAATGATCCGTGCATCCAAGAAGAGAAGCGCCCGAGTCCTGTCGGCAGAGTTCTCATGGCCTAATTTGAGGATTCATTCAGCAAAACTGAAGAAGATTATACTAAACAAGAGGAAAAAGAGGAGAGGGTTGTTTGTATTCCCACTTCAGTCAAGGATGACTGGAGCTCGATATTCTTACTTGTGGATGAGCATGGCACAGGAGAATGGGTGGCATGTCTTACTTGATGCATGCGCATTGGGACCTAAGGACATGGAGACCTTGGGCCTCTCTCTCTTTAGGCCAGACTTTCTCATCTGCTCTTTTTTCAAGGTTTTTGGGAAGAACCCATCTGGGTTTGGATGCCTATTTGTCAAGAAATCCAGTGCTTCAATCTTAAAGGATTCAACTACTGCTGTAAGTGTAGGGATTGTGAGTCTTCTTCCAGCTACAAGACGATCTCAGTTCCCTGATGAATCAGCCACTACTGATATAGAGACTGAACAAACATCAAAGCTTAAATTGCATAAGGGCTTGGATCATGCGGATTCATTGGGCCTGATACTGATCAGTTTGAGAGCAAGATTCCTGATCAACTGGCTGGTAAATGCATTAATGAGCCTTCGACACCCACATTCAGAAAATGGACTTCCCCTAGTCAGAATCTATGGCCCAAATGTAGCATTTGACCGAGGACCAGCTGTGGCATTCAATGTGTTTGATTGGAAAGGAGAAAAGGTTGAGCCCACTCTAGTGCAAAAGCTTGCAGATCGAAGCAACATTTCCTTAAAGCTAAGGACCATTGGAGTGGAAGGAACACTAGGAAATAAAAAGCGAGATAAATCTAGTTCAGGAATATCTGTGGTCTCAGCAGCATTAGGACTCCTAACCAACTTTGAGGATGTGTACAACCTCTGGGCATTTGTATCCCGGTTTCTAGATGCTGACTTTGTGGAGAAAGAGCGATGGAGATATGTGGCTCTAAATCAGAAGACAGTCGAAGTTTAA 1608 43.59 MHSPCIRETSEACFQGCCLASLPGFPDPHGTDPKNLSSAAVSRYNFALTTVSSLFPNTQFTNHESLPPLDESFSSFNKAYPQYSNTNQADQIRAQEYYHLSMSNHVCLDYIGHGLFSYSQLQKLPFFEISYKSVNLNSQILYGGEESELESKIRKRIMDFMNISEADYSMVFTANQSSAFKLLADFYPFQSNQNLLTVYDYENEAVGAMIRASKKRSARVLSAEFSWPNLRIHSAKLKKIILNKRKKRRGLFVFPLQSRMTGARYSYLWMSMAQENGWHVLLDACALGPKDMETLGLSLFRPDFLICSFFKVFGKNPSGFGCLFVKKSSASILKDSTTAVSVGIVSLLPATRRSQFPDESATTDIETEQTSKLKLHKGLDHADSLGLILISLRARFLINWLVNALMSLRHPHSENGLPLVRIYGPNVAFDRGPAVAFNVFDWKGEKVEPTLVQKLADRSNISLKLRTIGVEGTLGNKKRDKSSSGISVVSAALGLLTNFEDVYNLWAFVSRFLDADFVEKERWRYVALNQKTVEV* 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4120662 4122643 + Vvi2g414 Vvi2g414 783113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g414 535 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 3 365 - -
Vvi2g414 535 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 376 535 - -
Vvi2g414 535 SUPERFAMILY PLP-dependent transferases 99 513 IPR015424 -
Vvi2g414 535 Gene3D - 131 370 IPR015421 GO:0003824
Vvi2g414 535 PANTHER MOLYBDENUM COFACTOR SULFURASE-LIKE PROTEIN 3 365 - -
Vvi2g414 535 PANTHER MOLYBDENUM COFACTOR SULFURASE-LIKE PROTEIN 376 535 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g414 - - - vvi:100265017 739.184
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g414 Vvi16g572 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g414 . . . . . . . . . . Cma02g01490 . Car02g01248 . . . Cpe05g00301 . . . . . . . . . . . . . . . . . Cone15ag0129 . Csa05g00332 Chy09g01177 . . . . . . . . . . Cmo02g01529 . . . . . . . Bhi12g00186 . . Lac11g2149 Hepe06g1593 . Lcy12g1710 Cla01g00309 Cam01g0321 Cec01g0312 Cco01g0329 Clacu01g0322 Cmu01g0307 . Lsi09g00317 . . Cme09g01710
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012639 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 29