Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g416 ATGAAAAACCTTTTTCAGACCTTTTCTGACACAACCCGTGTAGCTCATTGGTTGAGAGTTGAGACCACCTATCATCTGTGGGGTGGTCCACTGAAAACGACCCATGACAAACCTATTGGTGGGCCTAGGGTAGGTCCCAACACGTGCCCCTATCCCATCCATCGCTTGACTCTTTTGATCCATTCTCCGCCAGAAAAGAGGTCTTCAGTTTTCTCTAGAACCAAACAGTACTTTGGGTCTCTTTTTTGTGGAATGGCGTCGTTGCAGGAACACGAGATCGATCAAGACGACGAAGTTGGAACCTCTGATCTCAGCAGCAGTGCCGGAGAGCCTGAAGAGGAGAACAACGCCAACGATAATGGGATGTCGAAGCCTTCGTCTTCCGATCAAACGACGACGTTTCAGGCTTTGTCGATGAAGGAAGAGCCGGTGGATTCGGAACCAGATGCGGAGCAGAAGCCACAGGCGCCATCGATTGGGGTGGTGCCGGTCATTCAGATGCAGATGCCAATGCCGATTCCGATGCCCATGCCGGTATCGTCGGGACGGCGTTCTTCTACAAAGGACCGCCACACCAAGGTGGAGGGTCGTGGTCGGAGAATCCGGATTCCGGCCACTTGTGCTGCCAGGATCTTTCAGCTGACCCGGGAACTGGGTCACAAGTCTGATGGTGAGACCGTGCGGTGGTTGCTCGAACACGCTGAGCAGGCTATCATCGAAGCTACAGGAACCGGCACTGTCCCTGCTATTGCAGTTTCCGTCGGCGGAACCCTCAAGATTCCTACTTCGTCGTCATCGAACCCAGAAGGAGAGGCTCCAAAGAAAAGAAAGCGGCCGGCGAACAGTGAGTTTTATGACGTAAACGATGGTGTTTCAGTGTCGTCGGGTCTTGCCCCGGTCGGAGCCACCGCTGTGGCGGCAGCGGCCCCACAAGGACTCGTACCCATATGGGCCGTCGGAAACGCCGGAATGATGATCCCACCCAACGCTCCACAACTCTGGACGATTTCACCCTCAGTAAGCCCCGTTTTCAATATGTCTGCCCGACCCATTTCTTCATTCTCGACCATGGCTCCGTGTGTAAGTTCAACAACAACTACAACGAATACCAGTGCTACTAAACCCCAAATGCTGAGAGACTTCTCTCTGGAAATTTATGATAAAAAGGAGCTACAGTTCATGGGTAGGTCCGGTAATCAACAAACACAATCTTCCAAAATATTTGTGCTGCCTTGCAATATACACCACAGTTCTACCATCAAGCCCATTTTTTCTGTCTATTTCATAGTATTATGA 1296 51.54 MKNLFQTFSDTTRVAHWLRVETTYHLWGGPLKTTHDKPIGGPRVGPNTCPYPIHRLTLLIHSPPEKRSSVFSRTKQYFGSLFCGMASLQEHEIDQDDEVGTSDLSSSAGEPEEENNANDNGMSKPSSSDQTTTFQALSMKEEPVDSEPDAEQKPQAPSIGVVPVIQMQMPMPIPMPMPVSSGRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVGGTLKIPTSSSSNPEGEAPKKRKRPANSEFYDVNDGVSVSSGLAPVGATAVAAAAPQGLVPIWAVGNAGMMIPPNAPQLWTISPSVSPVFNMSARPISSFSTMAPCVSSTTTTTNTSATKPQMLRDFSLEIYDKKELQFMGRSGNQQTQSSKIFVLPCNIHHSSTIKPIFSVYFIVL* 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4139670 4141512 + Vvi2g416 Vvi2g416 783115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g416 431 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 356 404 IPR005333 GO:0003700
Vvi2g416 431 MobiDBLite consensus disorder prediction 177 196 - -
Vvi2g416 431 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 99 354 IPR005333 GO:0003700
Vvi2g416 431 MobiDBLite consensus disorder prediction 258 283 - -
Vvi2g416 431 Pfam TCP family transcription factor 186 272 IPR017887 -
Vvi2g416 431 PANTHER TRANSCRIPTION FACTOR TCP9-LIKE 99 354 - -
Vvi2g416 431 PANTHER TRANSCRIPTION FACTOR TCP9-LIKE 356 404 - -
Vvi2g416 431 ProSiteProfiles TCP domain profile. 187 241 IPR017887 -
Vvi2g416 431 MobiDBLite consensus disorder prediction 95 158 - -
Vvi2g416 431 MobiDBLite consensus disorder prediction 100 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g416 - - - vvi:100249539 557.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g416 Vvi15g493 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g416 . . . . . . Bma07g01629 Bma14g00579 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0740 Cone9ag0744 . . . . . Blo19g00306 Bda07g00504 Bda09g00062 Bpe08g01471 Bpe11g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi12g1133 . 108 255 TCP Transcription Factor Family AT3G47620 59.4 1.2e-37 154.8
Vvi2g416 ECH 183 404 TCP Transcription Factor Family AT5G51910 54.8 3.0e-60 229.2
Vvi15g493 ECH 109 337 TCP Transcription Factor Family AT5G51910 53.1 2.6e-56 216.1
Vvi10g689 . 71 247 TCP Transcription Factor Family AT5G08330 50.6 6.5e-45 177.9
Vvi12g203 ECH 5 217 TCP Transcription Factor Family AT1G53230 51.3 2.4e-49 193.4
Vvi19g139 ECH 28 274 TCP Transcription Factor Family AT3G15030 57.1 3.6e-59 226.1
Vvi17g460 . 89 187 TCP Transcription Factor Family AT5G60970 81.0 1.5e-40 164.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004457 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14590 PF03634 TCP 3.40E-28 No_clan Vvi TF