Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g416 ATGAAAAACCTTTTTCAGACCTTTTCTGACACAACCCGTGTAGCTCATTGGTTGAGAGTTGAGACCACCTATCATCTGTGGGGTGGTCCACTGAAAACGACCCATGACAAACCTATTGGTGGGCCTAGGGTAGGTCCCAACACGTGCCCCTATCCCATCCATCGCTTGACTCTTTTGATCCATTCTCCGCCAGAAAAGAGGTCTTCAGTTTTCTCTAGAACCAAACAGTACTTTGGGTCTCTTTTTTGTGGAATGGCGTCGTTGCAGGAACACGAGATCGATCAAGACGACGAAGTTGGAACCTCTGATCTCAGCAGCAGTGCCGGAGAGCCTGAAGAGGAGAACAACGCCAACGATAATGGGATGTCGAAGCCTTCGTCTTCCGATCAAACGACGACGTTTCAGGCTTTGTCGATGAAGGAAGAGCCGGTGGATTCGGAACCAGATGCGGAGCAGAAGCCACAGGCGCCATCGATTGGGGTGGTGCCGGTCATTCAGATGCAGATGCCAATGCCGATTCCGATGCCCATGCCGGTATCGTCGGGACGGCGTTCTTCTACAAAGGACCGCCACACCAAGGTGGAGGGTCGTGGTCGGAGAATCCGGATTCCGGCCACTTGTGCTGCCAGGATCTTTCAGCTGACCCGGGAACTGGGTCACAAGTCTGATGGTGAGACCGTGCGGTGGTTGCTCGAACACGCTGAGCAGGCTATCATCGAAGCTACAGGAACCGGCACTGTCCCTGCTATTGCAGTTTCCGTCGGCGGAACCCTCAAGATTCCTACTTCGTCGTCATCGAACCCAGAAGGAGAGGCTCCAAAGAAAAGAAAGCGGCCGGCGAACAGTGAGTTTTATGACGTAAACGATGGTGTTTCAGTGTCGTCGGGTCTTGCCCCGGTCGGAGCCACCGCTGTGGCGGCAGCGGCCCCACAAGGACTCGTACCCATATGGGCCGTCGGAAACGCCGGAATGATGATCCCACCCAACGCTCCACAACTCTGGACGATTTCACCCTCAGTAAGCCCCGTTTTCAATATGTCTGCCCGACCCATTTCTTCATTCTCGACCATGGCTCCGTGTGTAAGTTCAACAACAACTACAACGAATACCAGTGCTACTAAACCCCAAATGCTGAGAGACTTCTCTCTGGAAATTTATGATAAAAAGGAGCTACAGTTCATGGGTAGGTCCGGTAATCAACAAACACAATCTTCCAAAATATTTGTGCTGCCTTGCAATATACACCACAGTTCTACCATCAAGCCCATTTTTTCTGTCTATTTCATAGTATTATGA 1296 51.54 MKNLFQTFSDTTRVAHWLRVETTYHLWGGPLKTTHDKPIGGPRVGPNTCPYPIHRLTLLIHSPPEKRSSVFSRTKQYFGSLFCGMASLQEHEIDQDDEVGTSDLSSSAGEPEEENNANDNGMSKPSSSDQTTTFQALSMKEEPVDSEPDAEQKPQAPSIGVVPVIQMQMPMPIPMPMPVSSGRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVGGTLKIPTSSSSNPEGEAPKKRKRPANSEFYDVNDGVSVSSGLAPVGATAVAAAAPQGLVPIWAVGNAGMMIPPNAPQLWTISPSVSPVFNMSARPISSFSTMAPCVSSTTTTTNTSATKPQMLRDFSLEIYDKKELQFMGRSGNQQTQSSKIFVLPCNIHHSSTIKPIFSVYFIVL* 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4139670 4141512 + Vvi2g416 Vvi2g416 783115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g416 431 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 356 404 IPR005333 GO:0003700
Vvi2g416 431 MobiDBLite consensus disorder prediction 177 196 - -
Vvi2g416 431 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 99 354 IPR005333 GO:0003700
Vvi2g416 431 MobiDBLite consensus disorder prediction 258 283 - -
Vvi2g416 431 Pfam TCP family transcription factor 186 272 IPR017887 -
Vvi2g416 431 PANTHER TRANSCRIPTION FACTOR TCP9-LIKE 99 354 - -
Vvi2g416 431 PANTHER TRANSCRIPTION FACTOR TCP9-LIKE 356 404 - -
Vvi2g416 431 ProSiteProfiles TCP domain profile. 187 241 IPR017887 -
Vvi2g416 431 MobiDBLite consensus disorder prediction 95 158 - -
Vvi2g416 431 MobiDBLite consensus disorder prediction 100 139 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g416 Vvi15g493 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14590 PF03634 TCP 3.40E-28 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g416 - - vvi:100249539 557.37