Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi2g419 | ATGGCTGAATCAGCATATGTCAATTCAGCGCCTTCTGATGGCTATAGTCAGGGTCAAGAAATTGTGCCATTTCCTACCGCTAAGGGCTCATTGAAATTTTTTCTTCTACATGGGAATCTAGATATTTGGGTCAAGGAGGCCAAAACCCTTCCTAACATGGACATGTTTCATAGATCTCTATCAGACATGTTTGGCAGATTCTCACCTCATAAGATAACCAGTGATCCGTATGTCACAATTTCTGTAAGTGGGGCTGTGATTGGGAGGACTTTTGTGATTAGTAATTCTGAAAACCCTGTTTGGATGCAGCATTTTTATGTTCCTGTTGCACATCATGCTGCAGAAGTGCACTTTGTTGTGAAAGACAGTGATGTTGTGGGCTCTCAGATTATAGGGGCTGTTGGCATCCCGGTGGAGCAGATATACTCGGGTTCAAAAGTTGAAGGAACTTTTCAAATCCTTAATGGGAGTGGGAAGCCCCGTAAGCCTGGAGCTGTCTTGACTCTATCAATCCAGTACACACCAATAGAAAAGGTGACCCTTTACCAATTTGGTGTAGGGTCAGGTCCTGAATACACTGGGGTCCCTGGTACATACTTTCCCCTTAGAACCGGCAGCAAAGTCACACTTTATCAAGATGCCCATGTCCATGATGGCTGCCTTCCAAATTTGAAGCTTGATAATGATGTCCAGTTTGAGCATGGGAAATGTTGGCATGACATCTTTCAAGCAATAAGTCAGGCTCGTCGTCTGATCTACATCACGGGATGGTCTGTGTATCACAGTGTTAGACTGATACGAGATACTGATAATTCAACAGAATTCATGTTGGGGCACCTTCTGAAGACCAAGTCCCAGGAAGGTGTTAGAGTGCTGCTCCTTGTATGGGATGATCCTACTTCTCGAAGCATTCTGGGTTATAAAACAGATGGGATCATGCAAACATATGATGAGGAGACTCGCAGGTTTTTCAAGCACTCTTCTGTGCAGGTGCTACTTTGCCCTCGATCTGCTGGAAAAGGACATAGCTGGATCAAACAACAGGAAGTTGGGACAATCTATACCCATCATCAGAAGACTGTGATTGTGGATGCTGATGCAGGTCATTATAAAAGAAAGATTATTGCTTTCATTGGAGGTCTCGATTTATGTGCAGGGCGATATGATACTCCGCAGCATCATATTTTTAAAACATTACAAACAGTTCATCAAGATGACTACCATAATCCTAATTTCACGGGGCCTACTACTGGATGTCCACGAGAACCCTGGCATGATATGCACTGTAGAATTGATGGTCCTGCAGCATATGATATCCTCACCAATTTTGAGGAGCGCTGGTTAAAGGCTTCTAAACCCCGTGGACTTCAAAAGCTGAAAGCATCATCATATGATGATGCTTTACTCAAGCTTGAGAGAATTTCCGACATCATTGGGATGGCAGATGCCTCCTGCCCAAATGAAAACGATCCAGAAGCTTGGCATGTCCAGGTCTTCCGTTCGATTGACTCCACTTCTGTGGAAGGCTTTCCTAAGGAACCAAAGGAAGCTACAAGCAAGAACCTGGTTTGTGGGAAAAATATACTGATAGACATGAGTATACATACAGCATATGTCAAGGCTATTCGTGCTGCTCAGCATTTCATTTATATTGAGAACCAGTACTTCCTCGGGTCATCTTATAATTGGGCTTCTTACAAAGACTTAGGTGCAAACAATTTAATACCTATGGAAATTGCTCTCAAAATCGCTAACAAAATCAGAGCAAAAGAGAGGTTTTCTGCATATATTGTTATCCCAATGTGGCCAGAGGGCGTTCCTACAAGTACTCCTACACAGAGGATTCTTTTTTGGCAGCACAAAACAATGCAAATGATGTATGAAATGGTTTACAAGGCACTGCAAGAGGTTGGGCTTGAGAACCAATATCATCCACAAGACTATTTAAATTTCTTCTGCCTGGGGAATCGCGAGGAAGGAGTTGACACCTCAAATGCAGGAAATCAATCCGCAGCAAACACCCCTCAAGCACTTGCTCGTAAAAGCAGACGCTTCATGATTTATGTCCATTCAAAAGGAATGATAGTGGATGATGAATACTTGATAATAGGGTCTGCAAACATCAATCAACGTTCCATGGAAGGAACCAGAGACACCGAAATTGCAATGGGTGCCTATCAGCCTCATCATACATGGGCAAGAAAACAGTCTAGCCCACATGGTCAAATATATGGATATAGGATGTCACTATGGGCAGAGCACACTGGAGTACTGGAGGAATGTTTCAAGCAACCAGAAAGTGTTGAGTGTGTTAGACGGCTGAGGTCCTTGGGTGAGCTCAACTGGAGGCAGTTTGCAGCAGATCAAATAACAGAAATGAAGGGACACCTTCTGAAGTACCCTGTGGAAGTGGAGAGAACAGGGAAGGTGAGGCCTCTTCCTGGGTCTGAAACATTTCCAGATGTCGGTGGGAACATAGTGGGGACTTTTACAGCCATTCAAGAAAATCTCACCATATAA | 2520 | 43.61 | MAESAYVNSAPSDGYSQGQEIVPFPTAKGSLKFFLLHGNLDIWVKEAKTLPNMDMFHRSLSDMFGRFSPHKITSDPYVTISVSGAVIGRTFVISNSENPVWMQHFYVPVAHHAAEVHFVVKDSDVVGSQIIGAVGIPVEQIYSGSKVEGTFQILNGSGKPRKPGAVLTLSIQYTPIEKVTLYQFGVGSGPEYTGVPGTYFPLRTGSKVTLYQDAHVHDGCLPNLKLDNDVQFEHGKCWHDIFQAISQARRLIYITGWSVYHSVRLIRDTDNSTEFMLGHLLKTKSQEGVRVLLLVWDDPTSRSILGYKTDGIMQTYDEETRRFFKHSSVQVLLCPRSAGKGHSWIKQQEVGTIYTHHQKTVIVDADAGHYKRKIIAFIGGLDLCAGRYDTPQHHIFKTLQTVHQDDYHNPNFTGPTTGCPREPWHDMHCRIDGPAAYDILTNFEERWLKASKPRGLQKLKASSYDDALLKLERISDIIGMADASCPNENDPEAWHVQVFRSIDSTSVEGFPKEPKEATSKNLVCGKNILIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSYNWASYKDLGANNLIPMEIALKIANKIRAKERFSAYIVIPMWPEGVPTSTPTQRILFWQHKTMQMMYEMVYKALQEVGLENQYHPQDYLNFFCLGNREEGVDTSNAGNQSAANTPQALARKSRRFMIYVHSKGMIVDDEYLIIGSANINQRSMEGTRDTEIAMGAYQPHHTWARKQSSPHGQIYGYRMSLWAEHTGVLEECFKQPESVECVRRLRSLGELNWRQFAADQITEMKGHLLKYPVEVERTGKVRPLPGSETFPDVGGNIVGTFTAIQENLTI* | 840 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4153190 | 4161632 | - | Vvi2g419 | Vvi2g419 | 783118 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi2g419 | 839 | SMART | pld_4 | 685 | 712 | IPR001736 | GO:0003824 | |
Vvi2g419 | 839 | SMART | pld_4 | 352 | 387 | IPR001736 | GO:0003824 | |
Vvi2g419 | 839 | PIRSF | PLD_plant | 25 | 839 | IPR011402 | GO:0004630|GO:0005509|GO:0016020|GO:0046470 | |
Vvi2g419 | 839 | Gene3D | Endonuclease Chain A | 497 | 738 | - | - | |
Vvi2g419 | 839 | Pfam | Phospholipase D C terminal | 759 | 829 | IPR024632 | - | |
Vvi2g419 | 839 | Pfam | C2 domain | 38 | 153 | IPR000008 | - | |
Vvi2g419 | 839 | Pfam | Phospholipase D Active site motif | 686 | 712 | IPR001736 | GO:0003824 | |
Vvi2g419 | 839 | Pfam | Phospholipase D Active site motif | 353 | 387 | IPR001736 | GO:0003824 | |
Vvi2g419 | 839 | SUPERFAMILY | Phospholipase D/nuclease | 521 | 771 | - | - | |
Vvi2g419 | 839 | CDD | C2_plant_PLD | 34 | 174 | - | - | |
Vvi2g419 | 839 | PANTHER | PHOSPHOLIPASE D BETA 1-LIKE | 9 | 839 | - | - | |
Vvi2g419 | 839 | SMART | C2_3c | 39 | 150 | IPR000008 | - | |
Vvi2g419 | 839 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 36 | 176 | IPR035892 | - | |
Vvi2g419 | 839 | Gene3D | C2 domain | 34 | 162 | IPR035892 | - | |
Vvi2g419 | 839 | Gene3D | Endonuclease Chain A | 225 | 474 | - | - | |
Vvi2g419 | 839 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 352 | 387 | IPR001736 | GO:0003824 | |
Vvi2g419 | 839 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 685 | 712 | IPR001736 | GO:0003824 | |
Vvi2g419 | 839 | ProSiteProfiles | C2 domain profile. | 16 | 151 | IPR000008 | - | |
Vvi2g419 | 839 | PANTHER | PHOSPHOLIPASE D | 9 | 839 | IPR015679 | - | |
Vvi2g419 | 839 | SUPERFAMILY | Phospholipase D/nuclease | 195 | 453 | - | - |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi2g419 | K01115 | - | vvi:100252995 | 1711.04 |