Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g419 ATGGCTGAATCAGCATATGTCAATTCAGCGCCTTCTGATGGCTATAGTCAGGGTCAAGAAATTGTGCCATTTCCTACCGCTAAGGGCTCATTGAAATTTTTTCTTCTACATGGGAATCTAGATATTTGGGTCAAGGAGGCCAAAACCCTTCCTAACATGGACATGTTTCATAGATCTCTATCAGACATGTTTGGCAGATTCTCACCTCATAAGATAACCAGTGATCCGTATGTCACAATTTCTGTAAGTGGGGCTGTGATTGGGAGGACTTTTGTGATTAGTAATTCTGAAAACCCTGTTTGGATGCAGCATTTTTATGTTCCTGTTGCACATCATGCTGCAGAAGTGCACTTTGTTGTGAAAGACAGTGATGTTGTGGGCTCTCAGATTATAGGGGCTGTTGGCATCCCGGTGGAGCAGATATACTCGGGTTCAAAAGTTGAAGGAACTTTTCAAATCCTTAATGGGAGTGGGAAGCCCCGTAAGCCTGGAGCTGTCTTGACTCTATCAATCCAGTACACACCAATAGAAAAGGTGACCCTTTACCAATTTGGTGTAGGGTCAGGTCCTGAATACACTGGGGTCCCTGGTACATACTTTCCCCTTAGAACCGGCAGCAAAGTCACACTTTATCAAGATGCCCATGTCCATGATGGCTGCCTTCCAAATTTGAAGCTTGATAATGATGTCCAGTTTGAGCATGGGAAATGTTGGCATGACATCTTTCAAGCAATAAGTCAGGCTCGTCGTCTGATCTACATCACGGGATGGTCTGTGTATCACAGTGTTAGACTGATACGAGATACTGATAATTCAACAGAATTCATGTTGGGGCACCTTCTGAAGACCAAGTCCCAGGAAGGTGTTAGAGTGCTGCTCCTTGTATGGGATGATCCTACTTCTCGAAGCATTCTGGGTTATAAAACAGATGGGATCATGCAAACATATGATGAGGAGACTCGCAGGTTTTTCAAGCACTCTTCTGTGCAGGTGCTACTTTGCCCTCGATCTGCTGGAAAAGGACATAGCTGGATCAAACAACAGGAAGTTGGGACAATCTATACCCATCATCAGAAGACTGTGATTGTGGATGCTGATGCAGGTCATTATAAAAGAAAGATTATTGCTTTCATTGGAGGTCTCGATTTATGTGCAGGGCGATATGATACTCCGCAGCATCATATTTTTAAAACATTACAAACAGTTCATCAAGATGACTACCATAATCCTAATTTCACGGGGCCTACTACTGGATGTCCACGAGAACCCTGGCATGATATGCACTGTAGAATTGATGGTCCTGCAGCATATGATATCCTCACCAATTTTGAGGAGCGCTGGTTAAAGGCTTCTAAACCCCGTGGACTTCAAAAGCTGAAAGCATCATCATATGATGATGCTTTACTCAAGCTTGAGAGAATTTCCGACATCATTGGGATGGCAGATGCCTCCTGCCCAAATGAAAACGATCCAGAAGCTTGGCATGTCCAGGTCTTCCGTTCGATTGACTCCACTTCTGTGGAAGGCTTTCCTAAGGAACCAAAGGAAGCTACAAGCAAGAACCTGGTTTGTGGGAAAAATATACTGATAGACATGAGTATACATACAGCATATGTCAAGGCTATTCGTGCTGCTCAGCATTTCATTTATATTGAGAACCAGTACTTCCTCGGGTCATCTTATAATTGGGCTTCTTACAAAGACTTAGGTGCAAACAATTTAATACCTATGGAAATTGCTCTCAAAATCGCTAACAAAATCAGAGCAAAAGAGAGGTTTTCTGCATATATTGTTATCCCAATGTGGCCAGAGGGCGTTCCTACAAGTACTCCTACACAGAGGATTCTTTTTTGGCAGCACAAAACAATGCAAATGATGTATGAAATGGTTTACAAGGCACTGCAAGAGGTTGGGCTTGAGAACCAATATCATCCACAAGACTATTTAAATTTCTTCTGCCTGGGGAATCGCGAGGAAGGAGTTGACACCTCAAATGCAGGAAATCAATCCGCAGCAAACACCCCTCAAGCACTTGCTCGTAAAAGCAGACGCTTCATGATTTATGTCCATTCAAAAGGAATGATAGTGGATGATGAATACTTGATAATAGGGTCTGCAAACATCAATCAACGTTCCATGGAAGGAACCAGAGACACCGAAATTGCAATGGGTGCCTATCAGCCTCATCATACATGGGCAAGAAAACAGTCTAGCCCACATGGTCAAATATATGGATATAGGATGTCACTATGGGCAGAGCACACTGGAGTACTGGAGGAATGTTTCAAGCAACCAGAAAGTGTTGAGTGTGTTAGACGGCTGAGGTCCTTGGGTGAGCTCAACTGGAGGCAGTTTGCAGCAGATCAAATAACAGAAATGAAGGGACACCTTCTGAAGTACCCTGTGGAAGTGGAGAGAACAGGGAAGGTGAGGCCTCTTCCTGGGTCTGAAACATTTCCAGATGTCGGTGGGAACATAGTGGGGACTTTTACAGCCATTCAAGAAAATCTCACCATATAA 2520 43.61 MAESAYVNSAPSDGYSQGQEIVPFPTAKGSLKFFLLHGNLDIWVKEAKTLPNMDMFHRSLSDMFGRFSPHKITSDPYVTISVSGAVIGRTFVISNSENPVWMQHFYVPVAHHAAEVHFVVKDSDVVGSQIIGAVGIPVEQIYSGSKVEGTFQILNGSGKPRKPGAVLTLSIQYTPIEKVTLYQFGVGSGPEYTGVPGTYFPLRTGSKVTLYQDAHVHDGCLPNLKLDNDVQFEHGKCWHDIFQAISQARRLIYITGWSVYHSVRLIRDTDNSTEFMLGHLLKTKSQEGVRVLLLVWDDPTSRSILGYKTDGIMQTYDEETRRFFKHSSVQVLLCPRSAGKGHSWIKQQEVGTIYTHHQKTVIVDADAGHYKRKIIAFIGGLDLCAGRYDTPQHHIFKTLQTVHQDDYHNPNFTGPTTGCPREPWHDMHCRIDGPAAYDILTNFEERWLKASKPRGLQKLKASSYDDALLKLERISDIIGMADASCPNENDPEAWHVQVFRSIDSTSVEGFPKEPKEATSKNLVCGKNILIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSYNWASYKDLGANNLIPMEIALKIANKIRAKERFSAYIVIPMWPEGVPTSTPTQRILFWQHKTMQMMYEMVYKALQEVGLENQYHPQDYLNFFCLGNREEGVDTSNAGNQSAANTPQALARKSRRFMIYVHSKGMIVDDEYLIIGSANINQRSMEGTRDTEIAMGAYQPHHTWARKQSSPHGQIYGYRMSLWAEHTGVLEECFKQPESVECVRRLRSLGELNWRQFAADQITEMKGHLLKYPVEVERTGKVRPLPGSETFPDVGGNIVGTFTAIQENLTI* 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4153190 4161632 - Vvi2g419 Vvi2g419 783118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g419 839 SMART pld_4 685 712 IPR001736 GO:0003824
Vvi2g419 839 SMART pld_4 352 387 IPR001736 GO:0003824
Vvi2g419 839 PIRSF PLD_plant 25 839 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vvi2g419 839 Gene3D Endonuclease Chain A 497 738 - -
Vvi2g419 839 Pfam Phospholipase D C terminal 759 829 IPR024632 -
Vvi2g419 839 Pfam C2 domain 38 153 IPR000008 -
Vvi2g419 839 Pfam Phospholipase D Active site motif 686 712 IPR001736 GO:0003824
Vvi2g419 839 Pfam Phospholipase D Active site motif 353 387 IPR001736 GO:0003824
Vvi2g419 839 SUPERFAMILY Phospholipase D/nuclease 521 771 - -
Vvi2g419 839 CDD C2_plant_PLD 34 174 - -
Vvi2g419 839 PANTHER PHOSPHOLIPASE D BETA 1-LIKE 9 839 - -
Vvi2g419 839 SMART C2_3c 39 150 IPR000008 -
Vvi2g419 839 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 36 176 IPR035892 -
Vvi2g419 839 Gene3D C2 domain 34 162 IPR035892 -
Vvi2g419 839 Gene3D Endonuclease Chain A 225 474 - -
Vvi2g419 839 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 352 387 IPR001736 GO:0003824
Vvi2g419 839 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 685 712 IPR001736 GO:0003824
Vvi2g419 839 ProSiteProfiles C2 domain profile. 16 151 IPR000008 -
Vvi2g419 839 PANTHER PHOSPHOLIPASE D 9 839 IPR015679 -
Vvi2g419 839 SUPERFAMILY Phospholipase D/nuclease 195 453 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g419 Vvi15g494 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g419 K01115 - vvi:100252995 1711.04