Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g420 ATGCAGGAACCGGGTTTGGGAATGATGGGTGGTGGCGGAATTGGTGGTTTGAGCGACGGTGATCAGCAGCAGCGCCAGCTCAAGGGGGAGATCGTCACACACCCACTATATGAGCAGCTACTTGCAGCTCATGTAGCGTGTCTCCGTGTGGCCACGCCGATCGATCAGTTGCCGCTGATCGACGCGCAGCTGACGCAGTCCCATCACCTCCTCCGCTCCTACGCATCGCAGCAGCACCACCACGGCAACTCCCTCTCACCCCATGAGAGGCAAGAGCTCGACAACTTCTTGTCGCAATATTTATTAGTTTTGTGTACTTTCAAAGAACAGCTTCAACAACATGTCAGAGTCCATGCTGTTGAAGCTGTCATGGCCTGCCGTGAGATAGAACAAACCTTACAAGCCCTCACTGGGGTGAGTCTGGGTGAGGGGAGTGGTGCAACCATGTCTGACGATGAGGAGGAGATGCAGATGGATTTTTCATTAGATCAAGGAGGGGGTGACGGGCATGACATGATGGGGTTTGGTCCACTGCTTCCAACTGAATCTGAAAGGACTCTCATGGAGAGAGTACGGCAAGAACTGAAGATTGAACTCAAGCAGGGATTCAAATCAAGAATCGAGGATGTGAGAGAGGAAATTCTCAGAAAAAGAAGGGCAGGGAAACTACCAGGAGACACAACCTCCGTGTTGAAAAACTGGTGGCAGCAACACTCAAAGTGGCCATACCCAACTGAAGACGACAAGGCAAAACTAGTGGAGGAGACGGGGTTGCAGCTAAAGCAAATCAACAATTGGTTCATCAACCAAAGGAAGCGCAATTGGCACAGTAATTCTCAGTCGGTGACCGCCTTAAAGTCGAAGCGCAAGAGGTAG 876 51.37 MQEPGLGMMGGGGIGGLSDGDQQQRQLKGEIVTHPLYEQLLAAHVACLRVATPIDQLPLIDAQLTQSHHLLRSYASQQHHHGNSLSPHERQELDNFLSQYLLVLCTFKEQLQQHVRVHAVEAVMACREIEQTLQALTGVSLGEGSGATMSDDEEEMQMDFSLDQGGGDGHDMMGFGPLLPTESERTLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTALKSKRKR* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4164200 4172140 - Vvi2g420 Vvi2g420 783119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g420 291 ProSiteProfiles 'Homeobox' domain profile. 214 277 IPR001356 GO:0003677
Vvi2g420 291 SMART KNOX2_2 83 138 IPR005541 GO:0003677|GO:0005634
Vvi2g420 291 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 291 - -
Vvi2g420 291 Gene3D - 213 287 - -
Vvi2g420 291 ProSiteProfiles ELK domain profile. 194 214 IPR005539 GO:0003677
Vvi2g420 291 Pfam KNOX2 domain 86 137 IPR005541 GO:0003677|GO:0005634
Vvi2g420 291 MobiDBLite consensus disorder prediction 1 21 - -
Vvi2g420 291 Pfam Homeobox KN domain 234 273 IPR008422 GO:0003677|GO:0006355
Vvi2g420 291 SUPERFAMILY Homeodomain-like 216 280 IPR009057 -
Vvi2g420 291 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Vvi2g420 291 Pfam KNOX1 domain 27 68 IPR005540 GO:0003677|GO:0005634
Vvi2g420 291 SMART HOX_1 216 281 IPR001356 GO:0003677
Vvi2g420 291 CDD homeodomain 217 278 IPR001356 GO:0003677
Vvi2g420 291 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 291 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14591 PF03791 KNOX2 2.70E-18 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g420 - - vvi:100259923 564.303