Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g422 ATGAAGAGGATAGAGAATGCAGCGAGTAGGCAAGTGACCTTCTCAAAGAGGAGGAGTGGGCTATTGAAGAAGGCCTTTGAGCTGTCAGTGCTTTGTGATGCTGAAGTTGCACTCATCATCTTCTCTCCAAGAGGAAAGGTCTTTGAGTTCTCTAGTTCCAGTATTAACAAGACAATAGAACGCTACCAAAGTAAAGCCAAGGGCCTAGGAATCAGCAAGAGAGGAGCTCCAGAAAATGAGCAGCATCACTTGGAGGGAGAAACTGTTGACCTGGCAAAGAAGATTGAGCTCCTCGAAGTTTCTAAACGAAGACTATTAGGCGAATGTTTGGACTCATGTTCAATAGAAGAGCTACAACAGATAGAGAATGAATTGGAGCAAAGCTTAAGCAACATTAGGATACAAAAGAATCATTTATGCAAGGGGCACATTGAGCGGCTGAAGGAGCAGGAAAGAATTCTAGGAGAAGAAAATGCAAAGTTACGAGGAAAGTGTGGGTTGCAGCCACTGCAACCATCCACCAAACATCAGTCAGTACCATATGTAGAAATATCGGAGGTAGAGACAGAATTGTTCATAGGACCACCAGAAAGACGAACAGTCCGTTATCTGTCAGAGACCTGA 624 43.91 MKRIENAASRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKVFEFSSSSINKTIERYQSKAKGLGISKRGAPENEQHHLEGETVDLAKKIELLEVSKRRLLGECLDSCSIEELQQIENELEQSLSNIRIQKNHLCKGHIERLKEQERILGEENAKLRGKCGLQPLQPSTKHQSVPYVEISEVETELFIGPPERRTVRYLSET* 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4197373 4209047 + Vvi2g422 Vvi2g422 783121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g422 207 PANTHER MADS-BOX PROTEIN SOC1 1 197 - -
Vvi2g422 207 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Vvi2g422 207 Coils Coil 115 138 - -
Vvi2g422 207 ProSiteProfiles K-box domain profile. 81 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi2g422 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 50 IPR002100 GO:0003677|GO:0046983
Vvi2g422 207 Gene3D - 6 72 IPR036879 GO:0003677|GO:0046983
Vvi2g422 207 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Vvi2g422 207 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Vvi2g422 207 Coils Coil 144 164 - -
Vvi2g422 207 CDD MADS_MEF2_like 1 63 IPR033896 GO:0000977|GO:0045944
Vvi2g422 207 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Vvi2g422 207 SUPERFAMILY SRF-like 1 65 IPR036879 GO:0003677|GO:0046983
Vvi2g422 207 Pfam K-box region 78 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi2g422 207 PANTHER MADS BOX PROTEIN 1 197 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g422 Vvi16g545 ECH
Vvi2g422 Vvi15g502 ECH
Vvi2g422 Vvi15g504 ECH
Vvi2g422 Vvi16g549 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14592 PF01486 K-box 2.80E-24 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g422 - - vvi:100246102 400.593