Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi2g422 | ATGAAGAGGATAGAGAATGCAGCGAGTAGGCAAGTGACCTTCTCAAAGAGGAGGAGTGGGCTATTGAAGAAGGCCTTTGAGCTGTCAGTGCTTTGTGATGCTGAAGTTGCACTCATCATCTTCTCTCCAAGAGGAAAGGTCTTTGAGTTCTCTAGTTCCAGTATTAACAAGACAATAGAACGCTACCAAAGTAAAGCCAAGGGCCTAGGAATCAGCAAGAGAGGAGCTCCAGAAAATGAGCAGCATCACTTGGAGGGAGAAACTGTTGACCTGGCAAAGAAGATTGAGCTCCTCGAAGTTTCTAAACGAAGACTATTAGGCGAATGTTTGGACTCATGTTCAATAGAAGAGCTACAACAGATAGAGAATGAATTGGAGCAAAGCTTAAGCAACATTAGGATACAAAAGAATCATTTATGCAAGGGGCACATTGAGCGGCTGAAGGAGCAGGAAAGAATTCTAGGAGAAGAAAATGCAAAGTTACGAGGAAAGTGTGGGTTGCAGCCACTGCAACCATCCACCAAACATCAGTCAGTACCATATGTAGAAATATCGGAGGTAGAGACAGAATTGTTCATAGGACCACCAGAAAGACGAACAGTCCGTTATCTGTCAGAGACCTGA | 624 | 43.91 | MKRIENAASRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKVFEFSSSSINKTIERYQSKAKGLGISKRGAPENEQHHLEGETVDLAKKIELLEVSKRRLLGECLDSCSIEELQQIENELEQSLSNIRIQKNHLCKGHIERLKEQERILGEENAKLRGKCGLQPLQPSTKHQSVPYVEISEVETELFIGPPERRTVRYLSET* | 208 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4197373 | 4209047 | + | Vvi2g422 | Vvi2g422 | 783121 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi2g422 | 207 | PANTHER | MADS-BOX PROTEIN SOC1 | 1 | 197 | - | - | |
Vvi2g422 | 207 | ProSiteProfiles | MADS-box domain profile. | 1 | 54 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi2g422 | 207 | Coils | Coil | 115 | 138 | - | - | |
Vvi2g422 | 207 | ProSiteProfiles | K-box domain profile. | 81 | 171 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Vvi2g422 | 207 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 3 | 50 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi2g422 | 207 | Gene3D | - | 6 | 72 | IPR036879 | GO:0003677|GO:0046983 | |
Vvi2g422 | 207 | PRINTS | MADS domain signature | 16 | 31 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi2g422 | 207 | PRINTS | MADS domain signature | 31 | 52 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi2g422 | 207 | Coils | Coil | 144 | 164 | - | - | |
Vvi2g422 | 207 | CDD | MADS_MEF2_like | 1 | 63 | IPR033896 | GO:0000977|GO:0045944 | |
Vvi2g422 | 207 | SMART | madsneu2 | 1 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi2g422 | 207 | SUPERFAMILY | SRF-like | 1 | 65 | IPR036879 | GO:0003677|GO:0046983 | |
Vvi2g422 | 207 | Pfam | K-box region | 78 | 165 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Vvi2g422 | 207 | PANTHER | MADS BOX PROTEIN | 1 | 197 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi2g422 | Vvi16g545 | ECH | |
Vvi2g422 | Vvi15g502 | ECH | |
Vvi2g422 | Vvi15g504 | ECH | |
Vvi2g422 | Vvi16g549 | ECH |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14592 | PF01486 | K-box | 2.80E-24 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi2g422 | - | - | vvi:100246102 | 400.593 |