Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g424 ATGGCTATTTTGACTACTGCTCTTGTGCTTCCGTCTGAGCTCAAACCTTCTTTCTCTCAACATCAAATTTCTCGCTTCGTCTCTAGAAGAAGACCTAGGAAGAGTCACCCTGCTTTTCCTGTTGCAAGGCTGTTCGGTCCAGCGATTTTCGAAGCTTCAAAGCTTGAGGTTCTGTTTCTGGGAGTGGACGAGAAGAAGCACCAGGGGAAGCTTCCTAGAATTTACACGCTTACGCATAGTGACATGACATCTAAACTCACTCTGGCTATATCTCAAACCATAAACAACTCTCAGTTGCAGGGGTGGTACAACAGATTACAGAGAGATGAGATACTTCATCTTCTGCAAAGAGCTTCCAGTGGTTTTGAAGGCTTTTGTTCATGGGGATAG 390 44.87 MAILTTALVLPSELKPSFSQHQISRFVSRRRPRKSHPAFPVARLFGPAIFEASKLEVLFLGVDEKKHQGKLPRIYTLTHSDMTSKLTLAISQTINNSQLQGWYNRLQRDEILHLLQRASSGFEGFCSWG* 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4231192 4232794 + Vvi2g424 Vvi2g424 783123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g424 129 PANTHER PROTEIN STAY-GREEN 1, CHLOROPLASTIC 1 112 - -
Vvi2g424 129 Pfam Staygreen protein 50 114 IPR024438 -
Vvi2g424 129 PANTHER PROTEIN STAY-GREEN 1, CHLOROPLASTIC-RELATED 1 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g424 K22013 SGR, SGRL; magnesium dechelatase [EC:4.99.1.10] - vvi:100265112 196.052
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g424 . . . . . . . . . . Cma02g01495 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00337 . . . . . . . . . . . . . . . . . . . Bhi12g00332 . . Lac11g2158 Hepe06g1598 . Lcy12g1716 Cla01g00317 Cam01g0327 Cec01g0319 Cco01g0336 Clacu01g0329 Cmu01g0313 Cre09g2198 Lsi09g00322 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0022079 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3